Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS12095

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS26605 and RS_RS12095 are separated by 171 nucleotidesRS_RS12095 and RS_RS12100 are separated by 13 nucleotides RS_RS26605: RS_RS26605 - DDE domain-containing protein, at 2,613,253 to 2,614,619 _RS26605 RS_RS12095: RS_RS12095 - prolipoprotein diacylglyceryl transferase, at 2,614,791 to 2,615,702 _RS12095 RS_RS12100: RS_RS12100 - LysR family transcriptional regulator, at 2,615,716 to 2,616,651 _RS12100 Position (kb) 2614 2615 2616Strain fitness (log2 ratio) -1 0 1at 2614.752 kb on + strandat 2616.024 kb on - strand, within RS_RS12100at 2616.217 kb on + strand, within RS_RS12100at 2616.344 kb on + strand, within RS_RS12100

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,614,752 + +0.2
2,616,024 - RS_RS12100 0.33 -0.5
2,616,217 + RS_RS12100 0.54 +1.3
2,616,344 + RS_RS12100 0.67 -0.0

Or see this region's nucleotide sequence