Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS07290 and RS_RS26585 are separated by 23 nucleotides RS_RS26585 and RS_RS07295 are separated by 171 nucleotides RS_RS07295 and RS_RS07300 are separated by 67 nucleotides RS_RS07300 and RS_RS07305 are separated by 19 nucleotides
RS_RS07290: RS_RS07290 - 2-methylisocitrate lyase, at 1,550,194 to 1,551,033
_RS07290
RS_RS26585: RS_RS26585 - disulfide bond formation protein DsbA, at 1,551,057 to 1,551,179
_RS26585
RS_RS07295: RS_RS07295 - 7-carboxy-7-deazaguanine synthase, at 1,551,351 to 1,551,989
_RS07295
RS_RS07300: RS_RS07300 - 6-carboxytetrahydropterin synthase QueD, at 1,552,057 to 1,552,533
_RS07300
RS_RS07305: RS_RS07305 - tRNA adenosine(34) deaminase TadA, at 1,552,553 to 1,553,104
_RS07305
Position (kb)
1551
1552 Strain fitness (log2 ratio)
-2
-1
0
1 at 1550.487 kb on - strand, within RS_RS07290 at 1550.514 kb on - strand, within RS_RS07290 at 1550.660 kb on + strand, within RS_RS07290 at 1550.661 kb on - strand, within RS_RS07290 at 1551.302 kb on - strand at 1551.323 kb on - strand at 1551.357 kb on + strand at 1551.358 kb on - strand at 1551.358 kb on - strand at 1551.358 kb on - strand at 1551.379 kb on - strand at 1551.540 kb on + strand, within RS_RS07295 at 1551.841 kb on - strand, within RS_RS07295 at 1551.906 kb on - strand, within RS_RS07295 at 1552.438 kb on + strand, within RS_RS07300 at 1552.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,550,487 - RS_RS07290 0.35 +0.3 1,550,514 - RS_RS07290 0.38 -0.0 1,550,660 + RS_RS07290 0.55 -0.5 1,550,661 - RS_RS07290 0.56 +0.1 1,551,302 - -0.6 1,551,323 - +0.2 1,551,357 + +0.6 1,551,358 - -1.2 1,551,358 - +0.6 1,551,358 - -1.4 1,551,379 - -0.2 1,551,540 + RS_RS07295 0.30 -0.9 1,551,841 - RS_RS07295 0.77 -2.1 1,551,906 - RS_RS07295 0.87 +0.2 1,552,438 + RS_RS07300 0.80 -0.2 1,552,474 + +0.2
Or see this region's nucleotide sequence