Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02200

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02195 and RS_RS02200 are separated by 133 nucleotidesRS_RS02200 and RS_RS02205 are separated by 21 nucleotidesRS_RS02205 and RS_RS02210 are separated by 25 nucleotides RS_RS02195: RS_RS02195 - hypothetical protein, at 471,350 to 472,630 _RS02195 RS_RS02200: RS_RS02200 - hypothetical protein, at 472,764 to 473,192 _RS02200 RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918 _RS02205 RS_RS02210: RS_RS02210 - hypothetical protein, at 473,944 to 474,507 _RS02210 Position (kb) 472 473 474Strain fitness (log2 ratio) -1 0 1at 471.797 kb on + strand, within RS_RS02195at 471.803 kb on + strand, within RS_RS02195at 472.628 kb on + strandat 472.998 kb on + strand, within RS_RS02200at 473.437 kb on - strand, within RS_RS02205at 473.484 kb on + strand, within RS_RS02205at 474.077 kb on + strand, within RS_RS02210at 474.077 kb on + strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.187 kb on + strand, within RS_RS02210

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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471,797 + RS_RS02195 0.35 -0.0
471,803 + RS_RS02195 0.35 +1.0
472,628 + -0.1
472,998 + RS_RS02200 0.55 -0.2
473,437 - RS_RS02205 0.32 +0.5
473,484 + RS_RS02205 0.38 +0.7
474,077 + RS_RS02210 0.24 +0.6
474,077 + RS_RS02210 0.24 -0.0
474,078 - RS_RS02210 0.24 -0.3
474,078 - RS_RS02210 0.24 -0.1
474,078 - RS_RS02210 0.24 -0.1
474,187 + RS_RS02210 0.43 -0.1

Or see this region's nucleotide sequence