Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36225

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36220 and RR42_RS36225 are separated by 49 nucleotidesRR42_RS36225 and RR42_RS36230 are separated by 217 nucleotides RR42_RS36220: RR42_RS36220 - nitrate ABC transporter substrate-binding protein, at 3,575,681 to 3,576,676 _RS36220 RR42_RS36225: RR42_RS36225 - (2Fe-2S)-binding protein, at 3,576,726 to 3,577,763 _RS36225 RR42_RS36230: RR42_RS36230 - nitrate ABC transporter ATPase, at 3,577,981 to 3,578,724 _RS36230 Position (kb) 3576 3577 3578Strain fitness (log2 ratio) -2 -1 0 1at 3575.801 kb on + strand, within RR42_RS36220at 3575.828 kb on + strand, within RR42_RS36220at 3575.828 kb on + strand, within RR42_RS36220at 3575.829 kb on - strand, within RR42_RS36220at 3575.852 kb on + strand, within RR42_RS36220at 3575.852 kb on + strand, within RR42_RS36220at 3575.852 kb on + strand, within RR42_RS36220at 3575.853 kb on - strand, within RR42_RS36220at 3575.853 kb on - strand, within RR42_RS36220at 3575.861 kb on + strand, within RR42_RS36220at 3575.862 kb on - strand, within RR42_RS36220at 3575.951 kb on + strand, within RR42_RS36220at 3575.952 kb on - strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.140 kb on + strand, within RR42_RS36220at 3576.141 kb on - strand, within RR42_RS36220at 3576.141 kb on - strand, within RR42_RS36220at 3576.171 kb on - strand, within RR42_RS36220at 3576.224 kb on + strand, within RR42_RS36220at 3576.224 kb on + strand, within RR42_RS36220at 3576.224 kb on + strand, within RR42_RS36220at 3576.225 kb on - strand, within RR42_RS36220at 3576.225 kb on - strand, within RR42_RS36220at 3576.225 kb on - strand, within RR42_RS36220at 3576.404 kb on + strand, within RR42_RS36220at 3576.503 kb on + strand, within RR42_RS36220at 3576.503 kb on + strand, within RR42_RS36220at 3576.504 kb on - strand, within RR42_RS36220at 3576.504 kb on - strand, within RR42_RS36220at 3576.504 kb on - strand, within RR42_RS36220at 3576.636 kb on - strandat 3576.636 kb on - strandat 3576.636 kb on - strandat 3576.710 kb on + strandat 3576.711 kb on - strandat 3576.711 kb on - strandat 3576.718 kb on + strandat 3576.718 kb on + strandat 3576.766 kb on - strandat 3576.766 kb on - strandat 3576.766 kb on - strandat 3576.964 kb on - strand, within RR42_RS36225at 3576.964 kb on - strand, within RR42_RS36225at 3577.041 kb on + strand, within RR42_RS36225at 3577.041 kb on + strand, within RR42_RS36225at 3577.042 kb on - strand, within RR42_RS36225at 3577.059 kb on + strand, within RR42_RS36225at 3577.059 kb on + strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.065 kb on + strand, within RR42_RS36225at 3577.272 kb on + strand, within RR42_RS36225at 3577.273 kb on - strand, within RR42_RS36225at 3577.273 kb on - strand, within RR42_RS36225at 3577.385 kb on + strand, within RR42_RS36225at 3577.386 kb on - strand, within RR42_RS36225at 3577.434 kb on + strand, within RR42_RS36225at 3577.435 kb on - strand, within RR42_RS36225at 3577.464 kb on + strand, within RR42_RS36225at 3577.618 kb on - strand, within RR42_RS36225at 3577.618 kb on - strand, within RR42_RS36225at 3577.830 kb on + strandat 3577.830 kb on + strandat 3578.104 kb on - strand, within RR42_RS36230at 3578.104 kb on - strand, within RR42_RS36230at 3578.104 kb on - strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.540 kb on - strand, within RR42_RS36230at 3578.659 kb on + strandat 3578.722 kb on + strandat 3578.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,575,801 + RR42_RS36220 0.12 +0.7
3,575,828 + RR42_RS36220 0.15 +0.6
3,575,828 + RR42_RS36220 0.15 +0.6
3,575,829 - RR42_RS36220 0.15 -0.5
3,575,852 + RR42_RS36220 0.17 +0.8
3,575,852 + RR42_RS36220 0.17 -0.6
3,575,852 + RR42_RS36220 0.17 -2.1
3,575,853 - RR42_RS36220 0.17 +0.0
3,575,853 - RR42_RS36220 0.17 +0.6
3,575,861 + RR42_RS36220 0.18 +0.3
3,575,862 - RR42_RS36220 0.18 +0.2
3,575,951 + RR42_RS36220 0.27 -1.0
3,575,952 - RR42_RS36220 0.27 -0.5
3,576,140 + RR42_RS36220 0.46 -0.3
3,576,140 + RR42_RS36220 0.46 +0.1
3,576,140 + RR42_RS36220 0.46 +1.6
3,576,140 + RR42_RS36220 0.46 -0.3
3,576,140 + RR42_RS36220 0.46 -0.4
3,576,140 + RR42_RS36220 0.46 +0.6
3,576,140 + RR42_RS36220 0.46 -0.1
3,576,141 - RR42_RS36220 0.46 -0.6
3,576,141 - RR42_RS36220 0.46 -0.4
3,576,171 - RR42_RS36220 0.49 +0.6
3,576,224 + RR42_RS36220 0.55 +0.7
3,576,224 + RR42_RS36220 0.55 -0.3
3,576,224 + RR42_RS36220 0.55 -0.0
3,576,225 - RR42_RS36220 0.55 +0.6
3,576,225 - RR42_RS36220 0.55 -0.1
3,576,225 - RR42_RS36220 0.55 +1.0
3,576,404 + RR42_RS36220 0.73 -0.8
3,576,503 + RR42_RS36220 0.83 -0.0
3,576,503 + RR42_RS36220 0.83 -1.3
3,576,504 - RR42_RS36220 0.83 +0.7
3,576,504 - RR42_RS36220 0.83 +0.5
3,576,504 - RR42_RS36220 0.83 -0.0
3,576,636 - -0.7
3,576,636 - -0.6
3,576,636 - -0.7
3,576,710 + +0.5
3,576,711 - -0.5
3,576,711 - +0.9
3,576,718 + -0.9
3,576,718 + +1.0
3,576,766 - +0.8
3,576,766 - -0.3
3,576,766 - +0.2
3,576,964 - RR42_RS36225 0.23 +0.4
3,576,964 - RR42_RS36225 0.23 +0.1
3,577,041 + RR42_RS36225 0.30 +0.5
3,577,041 + RR42_RS36225 0.30 -0.3
3,577,042 - RR42_RS36225 0.30 -0.5
3,577,059 + RR42_RS36225 0.32 +0.5
3,577,059 + RR42_RS36225 0.32 +0.6
3,577,060 - RR42_RS36225 0.32 -0.6
3,577,060 - RR42_RS36225 0.32 -0.7
3,577,060 - RR42_RS36225 0.32 -0.1
3,577,065 + RR42_RS36225 0.33 -0.6
3,577,272 + RR42_RS36225 0.53 -0.0
3,577,273 - RR42_RS36225 0.53 -0.5
3,577,273 - RR42_RS36225 0.53 +0.6
3,577,385 + RR42_RS36225 0.63 +0.9
3,577,386 - RR42_RS36225 0.64 -0.5
3,577,434 + RR42_RS36225 0.68 -0.5
3,577,435 - RR42_RS36225 0.68 +0.4
3,577,464 + RR42_RS36225 0.71 +0.6
3,577,618 - RR42_RS36225 0.86 -0.7
3,577,618 - RR42_RS36225 0.86 +1.1
3,577,830 + +0.7
3,577,830 + -0.8
3,578,104 - RR42_RS36230 0.17 +0.3
3,578,104 - RR42_RS36230 0.17 -1.8
3,578,104 - RR42_RS36230 0.17 -0.4
3,578,527 + RR42_RS36230 0.73 +0.2
3,578,527 + RR42_RS36230 0.73 +0.2
3,578,527 + RR42_RS36230 0.73 +0.3
3,578,528 - RR42_RS36230 0.74 -0.2
3,578,528 - RR42_RS36230 0.74 -1.7
3,578,528 - RR42_RS36230 0.74 -0.3
3,578,528 - RR42_RS36230 0.74 -0.6
3,578,540 - RR42_RS36230 0.75 +0.7
3,578,659 + +0.9
3,578,722 + -0.6
3,578,722 + -0.8

Or see this region's nucleotide sequence