Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28345

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28340 and RR42_RS28345 are separated by 25 nucleotidesRR42_RS28345 and RR42_RS28350 are separated by 38 nucleotides RR42_RS28340: RR42_RS28340 - phthalate 4,5-dioxygenase, at 1,718,835 to 1,720,118 _RS28340 RR42_RS28345: RR42_RS28345 - ABC transporter substrate-binding protein, at 1,720,144 to 1,721,127 _RS28345 RR42_RS28350: RR42_RS28350 - phthalate 4,5-dioxygenase, at 1,721,166 to 1,722,404 _RS28350 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -2 -1 0 1at 1719.467 kb on - strand, within RR42_RS28340at 1719.467 kb on - strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.710 kb on + strand, within RR42_RS28340at 1719.711 kb on + strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.711 kb on - strand, within RR42_RS28340at 1719.712 kb on + strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.713 kb on - strand, within RR42_RS28340at 1719.720 kb on + strand, within RR42_RS28340at 1719.839 kb on - strand, within RR42_RS28340at 1719.854 kb on - strand, within RR42_RS28340at 1719.857 kb on + strand, within RR42_RS28340at 1719.937 kb on + strand, within RR42_RS28340at 1719.937 kb on + strand, within RR42_RS28340at 1719.938 kb on - strand, within RR42_RS28340at 1719.958 kb on + strand, within RR42_RS28340at 1719.959 kb on - strand, within RR42_RS28340at 1720.112 kb on + strandat 1720.136 kb on + strandat 1720.145 kb on + strandat 1720.568 kb on + strand, within RR42_RS28345at 1720.568 kb on + strand, within RR42_RS28345at 1720.569 kb on - strand, within RR42_RS28345at 1720.719 kb on + strand, within RR42_RS28345at 1720.719 kb on + strand, within RR42_RS28345at 1720.857 kb on - strandat 1720.857 kb on - strand, within RR42_RS28345at 1720.857 kb on - strand, within RR42_RS28345at 1721.058 kb on - strandat 1721.117 kb on + strandat 1721.139 kb on + strandat 1721.546 kb on + strand, within RR42_RS28350at 1721.665 kb on + strand, within RR42_RS28350at 1721.698 kb on + strand, within RR42_RS28350at 1721.746 kb on + strand, within RR42_RS28350at 1721.747 kb on - strand, within RR42_RS28350

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,719,467 - RR42_RS28340 0.49 +0.7
1,719,467 - RR42_RS28340 0.49 -0.4
1,719,710 + RR42_RS28340 0.68 +1.5
1,719,710 + RR42_RS28340 0.68 -0.0
1,719,710 + RR42_RS28340 0.68 +0.0
1,719,711 + RR42_RS28340 0.68 +0.2
1,719,711 - RR42_RS28340 0.68 -0.1
1,719,711 - RR42_RS28340 0.68 +0.5
1,719,711 - RR42_RS28340 0.68 -0.6
1,719,711 - RR42_RS28340 0.68 -0.2
1,719,712 + RR42_RS28340 0.68 +0.9
1,719,713 - RR42_RS28340 0.68 -0.2
1,719,713 - RR42_RS28340 0.68 +1.4
1,719,713 - RR42_RS28340 0.68 -0.7
1,719,713 - RR42_RS28340 0.68 -0.5
1,719,720 + RR42_RS28340 0.69 +1.6
1,719,839 - RR42_RS28340 0.78 -0.7
1,719,854 - RR42_RS28340 0.79 -0.2
1,719,857 + RR42_RS28340 0.80 -0.2
1,719,937 + RR42_RS28340 0.86 +0.5
1,719,937 + RR42_RS28340 0.86 +0.7
1,719,938 - RR42_RS28340 0.86 -0.5
1,719,958 + RR42_RS28340 0.87 +0.1
1,719,959 - RR42_RS28340 0.88 -0.6
1,720,112 + +0.3
1,720,136 + -0.9
1,720,145 + +0.0
1,720,568 + RR42_RS28345 0.43 +1.0
1,720,568 + RR42_RS28345 0.43 -0.5
1,720,569 - RR42_RS28345 0.43 -0.7
1,720,719 + RR42_RS28345 0.58 -1.9
1,720,719 + RR42_RS28345 0.58 -0.4
1,720,857 - -0.5
1,720,857 - RR42_RS28345 0.72 +0.7
1,720,857 - RR42_RS28345 0.72 -0.2
1,721,058 - +0.3
1,721,117 + -1.1
1,721,139 + -1.3
1,721,546 + RR42_RS28350 0.31 -0.2
1,721,665 + RR42_RS28350 0.40 +1.3
1,721,698 + RR42_RS28350 0.43 +0.2
1,721,746 + RR42_RS28350 0.47 +1.2
1,721,747 - RR42_RS28350 0.47 +0.9

Or see this region's nucleotide sequence