Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22320

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22310 and RR42_RS22315 are separated by 202 nucleotidesRR42_RS22315 and RR42_RS22320 are separated by 35 nucleotidesRR42_RS22320 and RR42_RS22325 overlap by 4 nucleotides RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188 _RS22310 RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831 _RS22315 RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171 _RS22320 RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265 _RS22325 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -2 -1 0 1at 347.069 kb on - strand, within RR42_RS22310at 347.069 kb on - strand, within RR42_RS22310at 347.070 kb on + strand, within RR42_RS22310at 347.070 kb on + strand, within RR42_RS22310at 347.071 kb on - strand, within RR42_RS22310at 347.071 kb on - strand, within RR42_RS22310at 347.200 kb on + strandat 347.219 kb on + strandat 347.219 kb on + strandat 347.254 kb on - strandat 347.259 kb on + strandat 347.545 kb on - strand, within RR42_RS22315at 347.653 kb on + strand, within RR42_RS22315at 347.654 kb on - strand, within RR42_RS22315at 347.654 kb on - strand, within RR42_RS22315at 347.654 kb on - strand, within RR42_RS22315at 347.654 kb on - strand, within RR42_RS22315at 347.675 kb on + strand, within RR42_RS22315at 347.784 kb on + strand, within RR42_RS22315at 347.785 kb on - strand, within RR42_RS22315at 347.922 kb on + strandat 347.922 kb on + strandat 347.923 kb on - strandat 347.923 kb on - strandat 347.923 kb on - strandat 347.923 kb on - strandat 347.923 kb on - strandat 348.354 kb on + strand, within RR42_RS22320at 348.354 kb on + strand, within RR42_RS22320at 348.354 kb on + strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.685 kb on - strand, within RR42_RS22320at 348.732 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.751 kb on - strand, within RR42_RS22320at 348.808 kb on - strand, within RR42_RS22320at 348.808 kb on - strand, within RR42_RS22320at 348.939 kb on + strand, within RR42_RS22320at 348.940 kb on - strand, within RR42_RS22320at 349.044 kb on + strandat 349.045 kb on - strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.057 kb on - strandat 349.057 kb on - strandat 349.068 kb on - strandat 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.356 kb on - strand, within RR42_RS22325at 349.380 kb on + strand, within RR42_RS22325at 349.465 kb on - strand, within RR42_RS22325at 349.517 kb on + strand, within RR42_RS22325at 349.647 kb on - strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.797 kb on - strand, within RR42_RS22325at 349.878 kb on + strand, within RR42_RS22325at 349.879 kb on + strand, within RR42_RS22325at 349.914 kb on - strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.069 kb on + strand, within RR42_RS22325at 350.070 kb on - strand, within RR42_RS22325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
347,069 - RR42_RS22310 0.87 -1.7
347,069 - RR42_RS22310 0.87 +0.0
347,070 + RR42_RS22310 0.87 -2.1
347,070 + RR42_RS22310 0.87 +1.0
347,071 - RR42_RS22310 0.87 +0.6
347,071 - RR42_RS22310 0.87 -0.1
347,200 + -1.0
347,219 + +0.1
347,219 + -0.1
347,254 - -0.4
347,259 + -0.5
347,545 - RR42_RS22315 0.35 +1.4
347,653 + RR42_RS22315 0.59 +0.6
347,654 - RR42_RS22315 0.60 +0.4
347,654 - RR42_RS22315 0.60 -0.2
347,654 - RR42_RS22315 0.60 -1.0
347,654 - RR42_RS22315 0.60 -0.2
347,675 + RR42_RS22315 0.64 -1.8
347,784 + RR42_RS22315 0.89 +0.5
347,785 - RR42_RS22315 0.89 -1.1
347,922 + +0.1
347,922 + -0.1
347,923 - -0.1
347,923 - +0.3
347,923 - +0.5
347,923 - -0.6
347,923 - +0.3
348,354 + RR42_RS22320 0.37 +0.5
348,354 + RR42_RS22320 0.37 -0.7
348,354 + RR42_RS22320 0.37 +0.2
348,355 - RR42_RS22320 0.37 +1.2
348,355 - RR42_RS22320 0.37 +1.2
348,355 - RR42_RS22320 0.37 +0.4
348,685 - RR42_RS22320 0.63 -0.1
348,732 + RR42_RS22320 0.66 -1.1
348,750 + RR42_RS22320 0.68 +0.2
348,750 + RR42_RS22320 0.68 +1.0
348,750 + RR42_RS22320 0.68 +0.0
348,751 - RR42_RS22320 0.68 +0.5
348,808 - RR42_RS22320 0.72 +0.3
348,808 - RR42_RS22320 0.72 +0.8
348,939 + RR42_RS22320 0.82 +0.0
348,940 - RR42_RS22320 0.82 -0.2
349,044 + -0.0
349,045 - +0.8
349,056 + -1.2
349,056 + -0.1
349,056 + +0.2
349,056 + +0.2
349,056 + -0.4
349,056 + -1.2
349,057 - +0.6
349,057 - -0.6
349,068 - -0.1
349,355 + RR42_RS22325 0.17 +0.3
349,355 + RR42_RS22325 0.17 -0.3
349,355 + RR42_RS22325 0.17 -0.7
349,355 + RR42_RS22325 0.17 +0.2
349,356 - RR42_RS22325 0.17 +0.2
349,380 + RR42_RS22325 0.19 +0.8
349,465 - RR42_RS22325 0.27 -1.4
349,517 + RR42_RS22325 0.32 -0.2
349,647 - RR42_RS22325 0.44 -0.3
349,787 + RR42_RS22325 0.56 -1.8
349,787 + RR42_RS22325 0.56 -0.9
349,788 - RR42_RS22325 0.56 +0.0
349,788 - RR42_RS22325 0.56 +0.3
349,788 - RR42_RS22325 0.56 +0.6
349,797 - RR42_RS22325 0.57 -0.2
349,878 + RR42_RS22325 0.65 +0.3
349,879 + RR42_RS22325 0.65 +0.1
349,914 - RR42_RS22325 0.68 -1.3
350,051 + RR42_RS22325 0.80 +0.8
350,051 + RR42_RS22325 0.80 -0.2
350,051 + RR42_RS22325 0.80 +0.9
350,069 + RR42_RS22325 0.82 -0.7
350,070 - RR42_RS22325 0.82 +0.6

Or see this region's nucleotide sequence