Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16585

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16580 and RR42_RS16585 are separated by 571 nucleotidesRR42_RS16585 and RR42_RS16590 are separated by 70 nucleotidesRR42_RS16590 and RR42_RS16595 are separated by 74 nucleotides RR42_RS16580: RR42_RS16580 - hypothetical protein, at 3,593,273 to 3,594,247 _RS16580 RR42_RS16585: RR42_RS16585 - hypothetical protein, at 3,594,819 to 3,595,439 _RS16585 RR42_RS16590: RR42_RS16590 - hypothetical protein, at 3,595,510 to 3,596,190 _RS16590 RR42_RS16595: RR42_RS16595 - thiolase, at 3,596,265 to 3,597,503 _RS16595 Position (kb) 3594 3595 3596Strain fitness (log2 ratio) -2 -1 0 1 2at 3594.039 kb on - strand, within RR42_RS16580at 3594.054 kb on - strand, within RR42_RS16580at 3594.313 kb on - strandat 3594.563 kb on - strandat 3594.563 kb on - strandat 3594.699 kb on - strandat 3594.699 kb on - strandat 3594.699 kb on - strandat 3594.744 kb on + strandat 3594.973 kb on + strand, within RR42_RS16585at 3594.990 kb on + strand, within RR42_RS16585at 3595.063 kb on + strand, within RR42_RS16585at 3595.063 kb on + strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.064 kb on - strand, within RR42_RS16585at 3595.078 kb on + strand, within RR42_RS16585at 3595.134 kb on + strand, within RR42_RS16585at 3595.135 kb on - strand, within RR42_RS16585at 3595.295 kb on + strand, within RR42_RS16585at 3595.313 kb on + strand, within RR42_RS16585at 3595.313 kb on + strand, within RR42_RS16585at 3595.314 kb on - strand, within RR42_RS16585at 3595.381 kb on + strandat 3595.382 kb on - strandat 3595.492 kb on + strandat 3595.493 kb on - strandat 3595.515 kb on + strandat 3595.515 kb on + strandat 3595.515 kb on + strandat 3595.648 kb on + strand, within RR42_RS16590at 3595.723 kb on + strand, within RR42_RS16590at 3595.740 kb on + strand, within RR42_RS16590at 3595.986 kb on + strand, within RR42_RS16590at 3595.987 kb on - strand, within RR42_RS16590at 3596.241 kb on - strandat 3596.275 kb on + strandat 3596.277 kb on + strandat 3596.277 kb on + strandat 3596.279 kb on + strandat 3596.280 kb on - strandat 3596.407 kb on - strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.432 kb on - strand, within RR42_RS16595

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,594,039 - RR42_RS16580 0.79 -0.9
3,594,054 - RR42_RS16580 0.80 +0.9
3,594,313 - +0.3
3,594,563 - +0.5
3,594,563 - +0.1
3,594,699 - -0.1
3,594,699 - -0.0
3,594,699 - +1.0
3,594,744 + -0.3
3,594,973 + RR42_RS16585 0.25 +0.4
3,594,990 + RR42_RS16585 0.28 +0.1
3,595,063 + RR42_RS16585 0.39 +0.4
3,595,063 + RR42_RS16585 0.39 +1.0
3,595,064 - RR42_RS16585 0.39 -0.1
3,595,064 - RR42_RS16585 0.39 +0.8
3,595,064 - RR42_RS16585 0.39 +1.0
3,595,064 - RR42_RS16585 0.39 +0.4
3,595,064 - RR42_RS16585 0.39 -0.1
3,595,064 - RR42_RS16585 0.39 +0.4
3,595,078 + RR42_RS16585 0.42 +0.4
3,595,134 + RR42_RS16585 0.51 -0.2
3,595,135 - RR42_RS16585 0.51 +0.2
3,595,295 + RR42_RS16585 0.77 +1.6
3,595,313 + RR42_RS16585 0.80 -0.5
3,595,313 + RR42_RS16585 0.80 +0.6
3,595,314 - RR42_RS16585 0.80 -0.1
3,595,381 + -0.5
3,595,382 - -0.3
3,595,492 + +0.7
3,595,493 - +2.0
3,595,515 + +0.5
3,595,515 + -0.0
3,595,515 + +0.7
3,595,648 + RR42_RS16590 0.20 -0.0
3,595,723 + RR42_RS16590 0.31 -1.8
3,595,740 + RR42_RS16590 0.34 +0.2
3,595,986 + RR42_RS16590 0.70 +0.6
3,595,987 - RR42_RS16590 0.70 -0.3
3,596,241 - -0.7
3,596,275 + +0.1
3,596,277 + -0.5
3,596,277 + -0.1
3,596,279 + -0.4
3,596,280 - -0.0
3,596,407 - RR42_RS16595 0.11 +0.1
3,596,431 + RR42_RS16595 0.13 +0.5
3,596,431 + RR42_RS16595 0.13 +0.4
3,596,431 + RR42_RS16595 0.13 -1.0
3,596,432 - RR42_RS16595 0.13 +0.3

Or see this region's nucleotide sequence