Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14765 and RR42_RS14770 are separated by 67 nucleotides RR42_RS14770 and RR42_RS14775 are separated by 195 nucleotides RR42_RS14775 and RR42_RS14780 overlap by 4 nucleotides
RR42_RS14765: RR42_RS14765 - transporter, at 3,181,729 to 3,182,610
_RS14765
RR42_RS14770: RR42_RS14770 - oligoribonuclease, at 3,182,678 to 3,183,328
_RS14770
RR42_RS14775: RR42_RS14775 - peptidase M48, at 3,183,524 to 3,184,771
_RS14775
RR42_RS14780: RR42_RS14780 - GTPase RsgA, at 3,184,768 to 3,185,796
_RS14780
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3182.547 kb on - strand at 3182.625 kb on + strand at 3183.413 kb on - strand at 3183.413 kb on - strand at 3183.413 kb on - strand at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.683 kb on + strand, within RR42_RS14775 at 3183.818 kb on + strand, within RR42_RS14775 at 3183.818 kb on + strand, within RR42_RS14775 at 3183.884 kb on + strand, within RR42_RS14775 at 3183.941 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.460 kb on + strand, within RR42_RS14775 at 3184.542 kb on + strand, within RR42_RS14775 at 3184.664 kb on + strand at 3184.664 kb on + strand at 3184.681 kb on + strand at 3184.715 kb on + strand at 3184.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,182,547 - +0.8 3,182,625 + +0.7 3,183,413 - -0.1 3,183,413 - +0.1 3,183,413 - -0.7 3,183,652 + RR42_RS14775 0.10 -2.1 3,183,652 + RR42_RS14775 0.10 -1.8 3,183,652 + RR42_RS14775 0.10 -1.1 3,183,652 + RR42_RS14775 0.10 -0.9 3,183,683 + RR42_RS14775 0.13 -0.4 3,183,818 + RR42_RS14775 0.24 -2.5 3,183,818 + RR42_RS14775 0.24 -0.9 3,183,884 + RR42_RS14775 0.29 +1.9 3,183,941 + RR42_RS14775 0.33 -0.3 3,184,027 + RR42_RS14775 0.40 -1.7 3,184,027 + RR42_RS14775 0.40 -0.3 3,184,027 + RR42_RS14775 0.40 -0.5 3,184,460 + RR42_RS14775 0.75 -0.5 3,184,542 + RR42_RS14775 0.82 -0.1 3,184,664 + -0.8 3,184,664 + +0.9 3,184,681 + +1.1 3,184,715 + -0.1 3,184,715 + +0.0
Or see this region's nucleotide sequence