Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00350 and RR42_RS00355 are separated by 141 nucleotides RR42_RS00355 and RR42_RS00360 are separated by 90 nucleotides
RR42_RS00350: RR42_RS00350 - LysR family transcriptional regulator, at 95,735 to 96,637
_RS00350
RR42_RS00355: RR42_RS00355 - hypothetical protein, at 96,779 to 97,741
_RS00355
RR42_RS00360: RR42_RS00360 - Asp/Glu/hydantoin racemase, at 97,832 to 98,569
_RS00360
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.790 kb on + strand at 95.908 kb on + strand, within RR42_RS00350 at 95.908 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.911 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.666 kb on + strand at 96.667 kb on - strand at 96.814 kb on - strand at 97.019 kb on + strand, within RR42_RS00355 at 97.020 kb on - strand, within RR42_RS00355 at 97.101 kb on - strand, within RR42_RS00355 at 97.115 kb on + strand, within RR42_RS00355 at 97.191 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.377 kb on - strand, within RR42_RS00355 at 97.465 kb on + strand, within RR42_RS00355 at 97.611 kb on - strand, within RR42_RS00355 at 97.834 kb on - strand at 97.834 kb on - strand at 98.440 kb on + strand, within RR42_RS00360 at 98.443 kb on - strand, within RR42_RS00360 at 98.543 kb on - strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.552 kb on - strand at 98.563 kb on + strand at 98.647 kb on - strand at 98.657 kb on - strand at 98.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 95,790 + -0.2 95,908 + RR42_RS00350 0.19 +0.3 95,908 + RR42_RS00350 0.19 -0.3 95,910 + RR42_RS00350 0.19 -0.9 95,910 + RR42_RS00350 0.19 +0.6 95,910 + RR42_RS00350 0.19 -0.5 95,910 + RR42_RS00350 0.19 -0.4 95,910 + RR42_RS00350 0.19 -0.2 95,911 - RR42_RS00350 0.19 -0.0 96,118 - RR42_RS00350 0.42 +0.4 96,118 - RR42_RS00350 0.42 -0.1 96,136 + RR42_RS00350 0.44 -2.0 96,136 + RR42_RS00350 0.44 +0.6 96,136 + RR42_RS00350 0.44 -0.8 96,137 - RR42_RS00350 0.45 -0.1 96,137 - RR42_RS00350 0.45 +0.6 96,140 + RR42_RS00350 0.45 +2.7 96,140 + RR42_RS00350 0.45 -0.2 96,666 + -0.9 96,667 - +0.4 96,814 - +0.2 97,019 + RR42_RS00355 0.25 -1.7 97,020 - RR42_RS00355 0.25 -1.0 97,101 - RR42_RS00355 0.33 -0.3 97,115 + RR42_RS00355 0.35 -1.7 97,191 + RR42_RS00355 0.43 -0.1 97,340 + RR42_RS00355 0.58 -0.5 97,340 + RR42_RS00355 0.58 +0.5 97,340 + RR42_RS00355 0.58 -1.9 97,341 - RR42_RS00355 0.58 +0.2 97,341 - RR42_RS00355 0.58 +0.8 97,341 - RR42_RS00355 0.58 -0.3 97,377 - RR42_RS00355 0.62 +0.0 97,465 + RR42_RS00355 0.71 +0.6 97,611 - RR42_RS00355 0.86 -0.3 97,834 - +1.6 97,834 - +0.2 98,440 + RR42_RS00360 0.82 +1.6 98,443 - RR42_RS00360 0.83 +0.8 98,543 - +0.1 98,551 + -0.3 98,551 + -0.6 98,551 + +0.1 98,552 - -1.0 98,563 + +0.0 98,647 - +1.2 98,657 - +0.5 98,702 - +0.0
Or see this region's nucleotide sequence