Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00230

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00220 and CA265_RS00225 are separated by 84 nucleotidesCA265_RS00225 and CA265_RS00230 are separated by 160 nucleotidesCA265_RS00230 and CA265_RS00235 are separated by 150 nucleotidesCA265_RS00235 and CA265_RS00240 are separated by 5 nucleotides CA265_RS00220: CA265_RS00220 - potassium-transporting ATPase subunit B, at 53,565 to 55,592 _RS00220 CA265_RS00225: CA265_RS00225 - potassium-transporting ATPase subunit C, at 55,677 to 56,237 _RS00225 CA265_RS00230: CA265_RS00230 - hypothetical protein, at 56,398 to 57,468 _RS00230 CA265_RS00235: CA265_RS00235 - hypothetical protein, at 57,619 to 57,867 _RS00235 CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003 _RS00240 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1at 55.430 kb on + strandat 55.470 kb on + strandat 55.495 kb on + strandat 55.516 kb on + strandat 55.516 kb on + strandat 55.516 kb on + strandat 55.517 kb on - strandat 55.517 kb on - strandat 55.517 kb on - strandat 55.517 kb on - strandat 55.517 kb on - strandat 55.517 kb on - strandat 55.519 kb on - strandat 55.519 kb on - strandat 55.519 kb on - strandat 55.547 kb on + strandat 55.547 kb on + strandat 55.549 kb on + strandat 55.718 kb on - strandat 55.732 kb on + strandat 55.738 kb on + strand, within CA265_RS00225at 55.739 kb on - strand, within CA265_RS00225at 55.739 kb on - strand, within CA265_RS00225at 55.739 kb on - strand, within CA265_RS00225at 55.741 kb on + strand, within CA265_RS00225at 55.742 kb on - strand, within CA265_RS00225at 55.742 kb on - strand, within CA265_RS00225at 55.769 kb on + strand, within CA265_RS00225at 55.867 kb on - strand, within CA265_RS00225at 55.896 kb on + strand, within CA265_RS00225at 55.896 kb on + strand, within CA265_RS00225at 55.897 kb on - strand, within CA265_RS00225at 55.952 kb on - strand, within CA265_RS00225at 55.990 kb on - strand, within CA265_RS00225at 56.015 kb on + strand, within CA265_RS00225at 56.016 kb on - strand, within CA265_RS00225at 56.064 kb on - strand, within CA265_RS00225at 56.144 kb on - strand, within CA265_RS00225at 56.197 kb on + strandat 56.235 kb on + strandat 56.300 kb on - strandat 56.414 kb on + strandat 56.598 kb on + strand, within CA265_RS00230at 56.609 kb on - strand, within CA265_RS00230at 56.691 kb on - strand, within CA265_RS00230at 56.829 kb on + strand, within CA265_RS00230at 56.851 kb on + strand, within CA265_RS00230at 56.854 kb on + strand, within CA265_RS00230at 56.878 kb on + strand, within CA265_RS00230at 56.879 kb on - strand, within CA265_RS00230at 56.887 kb on - strand, within CA265_RS00230at 56.917 kb on + strand, within CA265_RS00230at 56.918 kb on - strand, within CA265_RS00230at 56.962 kb on - strand, within CA265_RS00230at 57.003 kb on + strand, within CA265_RS00230at 57.003 kb on + strand, within CA265_RS00230at 57.085 kb on + strand, within CA265_RS00230at 57.085 kb on + strand, within CA265_RS00230at 57.091 kb on - strand, within CA265_RS00230at 57.171 kb on + strand, within CA265_RS00230at 57.210 kb on + strand, within CA265_RS00230at 57.253 kb on + strand, within CA265_RS00230at 57.254 kb on - strand, within CA265_RS00230at 57.316 kb on + strand, within CA265_RS00230at 57.334 kb on + strand, within CA265_RS00230at 57.601 kb on - strandat 57.619 kb on + strandat 57.633 kb on - strandat 57.663 kb on - strand, within CA265_RS00235at 57.663 kb on - strand, within CA265_RS00235at 57.787 kb on - strand, within CA265_RS00235at 57.831 kb on - strand, within CA265_RS00235at 57.848 kb on + strandat 57.993 kb on - strand, within CA265_RS00240at 58.126 kb on - strand, within CA265_RS00240at 58.126 kb on - strand, within CA265_RS00240at 58.146 kb on + strand, within CA265_RS00240at 58.190 kb on + strand, within CA265_RS00240at 58.212 kb on - strand, within CA265_RS00240at 58.367 kb on + strand, within CA265_RS00240at 58.381 kb on + strand, within CA265_RS00240at 58.390 kb on + strand, within CA265_RS00240at 58.390 kb on + strand, within CA265_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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55,430 + -0.8
55,470 + -0.6
55,495 + -0.1
55,516 + -0.3
55,516 + -0.1
55,516 + -0.2
55,517 - -0.1
55,517 - +0.4
55,517 - +0.5
55,517 - +0.8
55,517 - +0.5
55,517 - -0.2
55,519 - +0.2
55,519 - -0.6
55,519 - -2.6
55,547 + +0.1
55,547 + -1.7
55,549 + -0.0
55,718 - -0.6
55,732 + +0.1
55,738 + CA265_RS00225 0.11 -0.7
55,739 - CA265_RS00225 0.11 +0.1
55,739 - CA265_RS00225 0.11 -0.2
55,739 - CA265_RS00225 0.11 +0.2
55,741 + CA265_RS00225 0.11 -0.5
55,742 - CA265_RS00225 0.12 +0.8
55,742 - CA265_RS00225 0.12 +0.1
55,769 + CA265_RS00225 0.16 -0.6
55,867 - CA265_RS00225 0.34 +1.0
55,896 + CA265_RS00225 0.39 -0.4
55,896 + CA265_RS00225 0.39 -0.4
55,897 - CA265_RS00225 0.39 +1.3
55,952 - CA265_RS00225 0.49 +1.4
55,990 - CA265_RS00225 0.56 +0.5
56,015 + CA265_RS00225 0.60 +0.3
56,016 - CA265_RS00225 0.60 -0.5
56,064 - CA265_RS00225 0.69 -0.2
56,144 - CA265_RS00225 0.83 -0.2
56,197 + +0.4
56,235 + -0.2
56,300 - -0.2
56,414 + +0.4
56,598 + CA265_RS00230 0.19 +0.8
56,609 - CA265_RS00230 0.20 +1.4
56,691 - CA265_RS00230 0.27 -0.4
56,829 + CA265_RS00230 0.40 -0.2
56,851 + CA265_RS00230 0.42 -0.5
56,854 + CA265_RS00230 0.43 -0.1
56,878 + CA265_RS00230 0.45 -1.4
56,879 - CA265_RS00230 0.45 +0.4
56,887 - CA265_RS00230 0.46 +0.2
56,917 + CA265_RS00230 0.48 -0.6
56,918 - CA265_RS00230 0.49 -0.3
56,962 - CA265_RS00230 0.53 +1.1
57,003 + CA265_RS00230 0.56 -0.6
57,003 + CA265_RS00230 0.56 -1.5
57,085 + CA265_RS00230 0.64 -2.4
57,085 + CA265_RS00230 0.64 +0.3
57,091 - CA265_RS00230 0.65 +0.5
57,171 + CA265_RS00230 0.72 -1.6
57,210 + CA265_RS00230 0.76 -1.2
57,253 + CA265_RS00230 0.80 -1.8
57,254 - CA265_RS00230 0.80 -0.1
57,316 + CA265_RS00230 0.86 -2.4
57,334 + CA265_RS00230 0.87 -2.9
57,601 - -3.5
57,619 + -1.1
57,633 - -1.3
57,663 - CA265_RS00235 0.18 -0.4
57,663 - CA265_RS00235 0.18 -0.2
57,787 - CA265_RS00235 0.67 +0.0
57,831 - CA265_RS00235 0.85 +0.4
57,848 + -0.7
57,993 - CA265_RS00240 0.11 -0.9
58,126 - CA265_RS00240 0.22 +1.1
58,126 - CA265_RS00240 0.22 -0.8
58,146 + CA265_RS00240 0.24 +0.1
58,190 + CA265_RS00240 0.28 +0.1
58,212 - CA265_RS00240 0.30 +0.4
58,367 + CA265_RS00240 0.44 +1.5
58,381 + CA265_RS00240 0.45 +0.3
58,390 + CA265_RS00240 0.46 -0.1
58,390 + CA265_RS00240 0.46 +0.2

Or see this region's nucleotide sequence