Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29345

Experiment: LB, pH5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29340 and BPHYT_RS29345 are separated by 288 nucleotidesBPHYT_RS29345 and BPHYT_RS29350 are separated by 1 nucleotides BPHYT_RS29340: BPHYT_RS29340 - hypothetical protein, at 2,136,682 to 2,137,755 _RS29340 BPHYT_RS29345: BPHYT_RS29345 - lipoyl synthase, at 2,138,044 to 2,139,030 _RS29345 BPHYT_RS29350: BPHYT_RS29350 - acetoin dehydrogenase, at 2,139,032 to 2,140,144 _RS29350 Position (kb) 2138 2139 2140Strain fitness (log2 ratio) -1 0 1at 2137.274 kb on + strand, within BPHYT_RS29340at 2137.759 kb on - strandat 2137.759 kb on - strandat 2137.815 kb on - strandat 2137.816 kb on + strandat 2137.816 kb on + strandat 2137.817 kb on - strandat 2137.851 kb on - strandat 2138.630 kb on + strand, within BPHYT_RS29345at 2139.309 kb on + strand, within BPHYT_RS29350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH5
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2,137,274 + BPHYT_RS29340 0.55 +0.6
2,137,759 - -0.2
2,137,759 - +0.0
2,137,815 - -0.1
2,137,816 + -0.3
2,137,816 + +0.3
2,137,817 - -0.0
2,137,851 - +0.1
2,138,630 + BPHYT_RS29345 0.59 -0.6
2,139,309 + BPHYT_RS29350 0.25 +0.7

Or see this region's nucleotide sequence