Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotides ABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotides ABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides
ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950
_RS01600
ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888
_RS01605
ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814
_RS01610
ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963
_RS01615
Position (kb) 337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 336.931 kb on + strand at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.186 kb on - strand, within ABZR87_RS01605 at 337.302 kb on + strand, within ABZR87_RS01605 at 337.632 kb on + strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.728 kb on + strand, within ABZR87_RS01605 at 337.740 kb on + strand, within ABZR87_RS01605 at 337.827 kb on + strand at 337.827 kb on + strand at 337.827 kb on + strand at 337.828 kb on - strand at 337.828 kb on - strand at 337.828 kb on - strand at 337.828 kb on - strand at 338.096 kb on + strand, within ABZR87_RS01610 at 338.097 kb on - strand, within ABZR87_RS01610 at 338.112 kb on - strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.237 kb on + strand, within ABZR87_RS01610 at 338.246 kb on + strand, within ABZR87_RS01610 at 338.247 kb on - strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.458 kb on - strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.689 kb on - strand, within ABZR87_RS01610 at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.865 kb on - strand at 338.865 kb on - strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.869 kb on - strand at 338.878 kb on + strand at 339.718 kb on - strand, within ABZR87_RS01615 at 339.718 kb on - strand, within ABZR87_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 336,931 + +0.7 337,173 + ABZR87_RS01605 0.22 -1.9 337,173 + ABZR87_RS01605 0.22 -1.9 337,173 + ABZR87_RS01605 0.22 -3.0 337,173 + ABZR87_RS01605 0.22 -2.7 337,173 + ABZR87_RS01605 0.22 -1.9 337,173 + ABZR87_RS01605 0.22 -1.8 337,173 + ABZR87_RS01605 0.22 -3.0 337,173 + ABZR87_RS01605 0.22 -2.4 337,173 + ABZR87_RS01605 0.22 -2.2 337,173 + ABZR87_RS01605 0.22 -1.8 337,174 - ABZR87_RS01605 0.22 -2.2 337,174 - ABZR87_RS01605 0.22 -2.4 337,185 + ABZR87_RS01605 0.23 -0.4 337,185 + ABZR87_RS01605 0.23 -4.5 337,185 + ABZR87_RS01605 0.23 -1.9 337,186 - ABZR87_RS01605 0.23 -0.7 337,302 + ABZR87_RS01605 0.36 -3.4 337,632 + ABZR87_RS01605 0.72 -2.7 337,633 - ABZR87_RS01605 0.72 -2.1 337,633 - ABZR87_RS01605 0.72 -1.8 337,633 - ABZR87_RS01605 0.72 -2.5 337,633 - ABZR87_RS01605 0.72 -3.2 337,633 - ABZR87_RS01605 0.72 -2.8 337,728 + ABZR87_RS01605 0.82 -3.4 337,740 + ABZR87_RS01605 0.84 -0.7 337,827 + -1.5 337,827 + -1.7 337,827 + -2.8 337,828 - +1.5 337,828 - -2.0 337,828 - +0.4 337,828 - -0.2 338,096 + ABZR87_RS01610 0.21 +0.3 338,097 - ABZR87_RS01610 0.22 +0.7 338,112 - ABZR87_RS01610 0.23 +0.0 338,162 + ABZR87_RS01610 0.29 -0.5 338,162 + ABZR87_RS01610 0.29 -0.5 338,162 + ABZR87_RS01610 0.29 -0.3 338,162 + ABZR87_RS01610 0.29 -0.8 338,163 - ABZR87_RS01610 0.29 -0.1 338,163 - ABZR87_RS01610 0.29 +0.3 338,234 + ABZR87_RS01610 0.37 +0.5 338,234 + ABZR87_RS01610 0.37 +1.8 338,234 + ABZR87_RS01610 0.37 -0.7 338,235 - ABZR87_RS01610 0.37 +0.3 338,235 - ABZR87_RS01610 0.37 +0.5 338,235 - ABZR87_RS01610 0.37 -0.2 338,235 - ABZR87_RS01610 0.37 +0.0 338,235 - ABZR87_RS01610 0.37 -1.7 338,237 + ABZR87_RS01610 0.37 -1.0 338,246 + ABZR87_RS01610 0.38 -0.1 338,247 - ABZR87_RS01610 0.38 +1.1 338,303 + ABZR87_RS01610 0.44 +0.4 338,303 + ABZR87_RS01610 0.44 -0.2 338,303 + ABZR87_RS01610 0.44 -0.1 338,303 + ABZR87_RS01610 0.44 -0.4 338,304 - ABZR87_RS01610 0.44 -0.5 338,304 - ABZR87_RS01610 0.44 -0.1 338,304 - ABZR87_RS01610 0.44 +1.8 338,458 - ABZR87_RS01610 0.61 +0.4 338,576 + ABZR87_RS01610 0.74 -2.1 338,576 + ABZR87_RS01610 0.74 -1.3 338,577 - ABZR87_RS01610 0.74 -0.5 338,577 - ABZR87_RS01610 0.74 -0.5 338,689 - ABZR87_RS01610 0.86 -0.1 338,864 + +0.1 338,864 + +0.3 338,864 + +0.7 338,864 + +0.3 338,864 + -0.8 338,864 + +0.5 338,864 + +0.2 338,864 + +0.7 338,864 + -0.3 338,864 + +0.0 338,864 + +2.4 338,865 - +0.2 338,865 - +0.6 338,868 + -0.7 338,868 + +0.8 338,868 + -0.3 338,869 - -0.5 338,878 + +0.6 339,718 - ABZR87_RS01615 0.41 +0.9 339,718 - ABZR87_RS01615 0.41 -0.3
Or see this region's nucleotide sequence