Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06500

Experiment: R2A with Cadmium chloride hemipentahydrate 0.0390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
1,395,925	-				+0.4
1,395,925	-				-0.7
1,395,983	+				-0.2
1,396,200	+		LRK54_RS06495	0.25	+1.2
1,396,200	+		LRK54_RS06495	0.25	+0.6
1,396,200	+		LRK54_RS06495	0.25	-0.4
1,396,200	+		LRK54_RS06495	0.25	-0.4
1,396,200	+		LRK54_RS06495	0.25	-1.3
1,396,200	+		LRK54_RS06495	0.25	-0.5
1,396,200	+		LRK54_RS06495	0.25	+0.8
1,396,200	+		LRK54_RS06495	0.25	-0.8
1,396,200	+		LRK54_RS06495	0.25	-1.6
1,396,200	+		LRK54_RS06495	0.25	+0.8
1,396,200	+		LRK54_RS06495	0.25	+0.2
1,396,200	+		LRK54_RS06495	0.25	-0.0
1,396,200	+		LRK54_RS06495	0.25	-1.0
1,396,200	+		LRK54_RS06495	0.25	-1.0
1,396,200	+		LRK54_RS06495	0.25	-0.9
1,396,200	+		LRK54_RS06495	0.25	-1.4
1,396,200	+		LRK54_RS06495	0.25	-1.4
1,396,200	+		LRK54_RS06495	0.25	-0.4
1,396,200	+		LRK54_RS06495	0.25	-1.9
1,396,200	+		LRK54_RS06495	0.25	-0.2
1,396,200	+		LRK54_RS06495	0.25	-1.5
1,396,200	+		LRK54_RS06495	0.25	+1.0
1,396,200	+		LRK54_RS06495	0.25	+1.1
1,396,201	-		LRK54_RS06495	0.25	-1.0
1,396,201	-		LRK54_RS06495	0.25	-0.3
1,396,201	-		LRK54_RS06495	0.25	-0.9
1,396,201	-		LRK54_RS06495	0.25	+0.2
1,396,201	-		LRK54_RS06495	0.25	-0.9
1,396,201	-		LRK54_RS06495	0.25	+0.7
1,396,201	-		LRK54_RS06495	0.25	-0.4
1,396,201	-		LRK54_RS06495	0.25	-0.2
1,396,201	-		LRK54_RS06495	0.25	+2.4
1,396,201	-		LRK54_RS06495	0.25	-0.9
1,396,201	-		LRK54_RS06495	0.25	-0.9
1,396,201	-		LRK54_RS06495	0.25	-1.4
1,396,201	-		LRK54_RS06495	0.25	-1.0
1,396,201	-		LRK54_RS06495	0.25	-0.2
1,396,201	-		LRK54_RS06495	0.25	-1.1
1,396,201	-		LRK54_RS06495	0.25	-0.1
1,396,201	-		LRK54_RS06495	0.25	-0.3
1,396,201	-		LRK54_RS06495	0.25	+0.2
1,396,201	-		LRK54_RS06495	0.25	-1.2
1,396,201	-		LRK54_RS06495	0.25	+0.7
1,396,201	-		LRK54_RS06495	0.25	+0.2
1,396,201	-		LRK54_RS06495	0.25	-1.4
1,396,201	-		LRK54_RS06495	0.25	-0.6
1,396,201	-		LRK54_RS06495	0.25	-1.2
1,396,201	-		LRK54_RS06495	0.25	+0.5
1,396,332	+		LRK54_RS06495	0.39	-1.7
1,396,333	-		LRK54_RS06495	0.39	-1.7
1,396,333	-		LRK54_RS06495	0.39	-2.0
1,396,333	-		LRK54_RS06495	0.39	-2.5
1,396,333	-		LRK54_RS06495	0.39	-0.2
1,396,428	+		LRK54_RS06495	0.50	-2.1
1,396,428	+		LRK54_RS06495	0.50	-1.0
1,396,428	+		LRK54_RS06495	0.50	-0.4
1,396,429	-		LRK54_RS06495	0.50	-2.0
1,396,429	-		LRK54_RS06495	0.50	+0.4
1,396,470	+		LRK54_RS06495	0.54	-2.2
1,396,470	+		LRK54_RS06495	0.54	+0.1
1,396,470	+		LRK54_RS06495	0.54	-1.3
1,396,470	+		LRK54_RS06495	0.54	-0.4
1,396,470	+		LRK54_RS06495	0.54	-0.6
1,396,470	+		LRK54_RS06495	0.54	-2.0
1,396,470	+		LRK54_RS06495	0.54	+0.8
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-0.6
1,396,470	+		LRK54_RS06495	0.54	+0.1
1,396,470	+		LRK54_RS06495	0.54	+0.1
1,396,470	+		LRK54_RS06495	0.54	-2.1
1,396,470	+		LRK54_RS06495	0.54	-1.4
1,396,470	+		LRK54_RS06495	0.54	-1.6
1,396,470	+		LRK54_RS06495	0.54	-1.4
1,396,470	+		LRK54_RS06495	0.54	+1.4
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-2.8
1,396,470	+		LRK54_RS06495	0.54	-0.2
1,396,470	+		LRK54_RS06495	0.54	-0.7
1,396,470	+		LRK54_RS06495	0.54	+2.4
1,396,470	+		LRK54_RS06495	0.54	+0.1
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-2.6
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-0.2
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-1.7
1,396,470	+		LRK54_RS06495	0.54	+1.4
1,396,470	+		LRK54_RS06495	0.54	+1.4
1,396,470	+		LRK54_RS06495	0.54	-0.7
1,396,470	+		LRK54_RS06495	0.54	-2.7
1,396,470	+		LRK54_RS06495	0.54	-1.0
1,396,470	+		LRK54_RS06495	0.54	-0.6
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	-2.0
1,396,470	+		LRK54_RS06495	0.54	-0.9
1,396,470	+		LRK54_RS06495	0.54	-0.9
1,396,470	+		LRK54_RS06495	0.54	+0.8
1,396,470	+		LRK54_RS06495	0.54	-2.5
1,396,470	+		LRK54_RS06495	0.54	+0.4
1,396,470	+		LRK54_RS06495	0.54	+0.1
1,396,470	+		LRK54_RS06495	0.54	-0.2
1,396,470	+		LRK54_RS06495	0.54	-0.4
1,396,470	+		LRK54_RS06495	0.54	-2.7
1,396,470	+		LRK54_RS06495	0.54	-0.7
1,396,470	+		LRK54_RS06495	0.54	-0.6
1,396,471	-		LRK54_RS06495	0.55	-2.6
1,396,471	-		LRK54_RS06495	0.55	-0.6
1,396,471	-		LRK54_RS06495	0.55	+0.8
1,396,471	-		LRK54_RS06495	0.55	-1.7
1,396,471	-		LRK54_RS06495	0.55	-1.5
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	-1.3
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-0.6
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-1.7
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	+2.4
1,396,471	-		LRK54_RS06495	0.55	-2.0
1,396,471	-		LRK54_RS06495	0.55	+2.4
1,396,471	-		LRK54_RS06495	0.55	-1.0
1,396,471	-		LRK54_RS06495	0.55	-1.5
1,396,471	-		LRK54_RS06495	0.55	-0.6
1,396,471	-		LRK54_RS06495	0.55	+0.1
1,396,471	-		LRK54_RS06495	0.55	+0.1
1,396,471	-		LRK54_RS06495	0.55	-1.3
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	+0.8
1,396,471	-		LRK54_RS06495	0.55	-1.2
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	-1.2
1,396,471	-		LRK54_RS06495	0.55	-1.7
1,396,471	-		LRK54_RS06495	0.55	+0.8
1,396,471	-		LRK54_RS06495	0.55	-0.9
1,396,471	-		LRK54_RS06495	0.55	-0.7
1,396,471	-		LRK54_RS06495	0.55	-2.0
1,396,471	-		LRK54_RS06495	0.55	+0.1
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-2.0
1,396,471	-		LRK54_RS06495	0.55	-2.5
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	-0.2
1,396,471	-		LRK54_RS06495	0.55	-2.6
1,396,471	-		LRK54_RS06495	0.55	+0.8
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-0.7
1,396,471	-		LRK54_RS06495	0.55	-1.4
1,396,471	-		LRK54_RS06495	0.55	-1.2
1,396,471	-		LRK54_RS06495	0.55	+0.4
1,396,471	-		LRK54_RS06495	0.55	-0.6
1,396,471	-		LRK54_RS06495	0.55	-0.7
1,396,471	-		LRK54_RS06495	0.55	+2.4
1,396,471	-		LRK54_RS06495	0.55	-0.9
1,396,471	-		LRK54_RS06495	0.55	-1.2
1,396,471	-		LRK54_RS06495	0.55	-0.9
1,396,479	+		LRK54_RS06495	0.55	+0.1
1,396,479	+		LRK54_RS06495	0.55	+1.4
1,396,479	+		LRK54_RS06495	0.55	-0.7
1,396,479	+		LRK54_RS06495	0.55	+0.4
1,396,479	+		LRK54_RS06495	0.55	-0.9
1,396,479	+		LRK54_RS06495	0.55	-0.6
1,396,480	-		LRK54_RS06495	0.56	+0.8
1,396,480	-		LRK54_RS06495	0.56	+0.8
1,396,480	-		LRK54_RS06495	0.56	-1.3
1,396,480	-		LRK54_RS06495	0.56	+2.4
1,396,480	-		LRK54_RS06495	0.56	+0.8
1,396,480	-		LRK54_RS06495	0.56	-0.6
1,396,480	-		LRK54_RS06495	0.56	-0.6
1,396,480	-		LRK54_RS06495	0.56	-1.5
1,396,480	-		LRK54_RS06495	0.56	+0.4
1,396,480	-		LRK54_RS06495	0.56	-1.6
1,396,503	+		LRK54_RS06495	0.58	+0.8
1,396,503	+		LRK54_RS06495	0.58	-0.4
1,396,504	-		LRK54_RS06495	0.58	-2.5
1,396,504	-		LRK54_RS06495	0.58	-1.7
1,396,504	-		LRK54_RS06495	0.58	+0.4
1,396,504	-		LRK54_RS06495	0.58	-1.4
1,396,504	-		LRK54_RS06495	0.58	-0.4
1,396,524	+		LRK54_RS06495	0.60	+0.1
1,396,524	+		LRK54_RS06495	0.60	-1.3
1,396,525	-		LRK54_RS06495	0.60	-0.2
1,396,525	-		LRK54_RS06495	0.60	-0.9
1,396,551	+		LRK54_RS06495	0.63	-0.2
1,396,578	+		LRK54_RS06495	0.66	+0.8
1,396,578	+		LRK54_RS06495	0.66	-0.9
1,396,578	+		LRK54_RS06495	0.66	-1.4
1,396,578	+		LRK54_RS06495	0.66	-2.3
1,396,578	+		LRK54_RS06495	0.66	+0.1
1,396,579	-		LRK54_RS06495	0.66	-0.2
1,396,579	-		LRK54_RS06495	0.66	-0.9
1,396,579	-		LRK54_RS06495	0.66	-0.9
1,396,579	-		LRK54_RS06495	0.66	+0.1
1,396,579	-		LRK54_RS06495	0.66	+0.4
1,396,597	+		LRK54_RS06495	0.68	-2.6
1,396,597	+		LRK54_RS06495	0.68	-2.4
1,396,597	+		LRK54_RS06495	0.68	-1.0
1,396,597	+		LRK54_RS06495	0.68	-0.9
1,396,597	+		LRK54_RS06495	0.68	-1.3
1,396,598	-		LRK54_RS06495	0.69	-0.2
1,396,598	-		LRK54_RS06495	0.69	+0.8
1,396,599	+		LRK54_RS06495	0.69	+1.4
1,396,599	+		LRK54_RS06495	0.69	+0.4
1,396,600	-		LRK54_RS06495	0.69	-0.2
1,396,600	-		LRK54_RS06495	0.69	-0.4
1,396,600	-		LRK54_RS06495	0.69	-0.4
1,396,600	-		LRK54_RS06495	0.69	-0.2
1,396,617	+		LRK54_RS06495	0.71	-0.6
1,396,617	+		LRK54_RS06495	0.71	-1.4
1,396,617	+		LRK54_RS06495	0.71	-1.0
1,396,617	+		LRK54_RS06495	0.71	+0.4
1,396,617	+		LRK54_RS06495	0.71	-2.6
1,396,618	-		LRK54_RS06495	0.71	-0.4
1,396,618	-		LRK54_RS06495	0.71	+0.1
1,396,618	-		LRK54_RS06495	0.71	-1.9
1,396,949	+				+1.4
1,396,949	+				-0.4
1,396,949	+				-1.8
1,396,949	+				-2.4
1,396,949	+				+0.8
1,396,949	+				-0.4
1,396,949	+				-0.4
1,396,949	+				-0.8
1,396,949	+				-1.6
1,396,949	+				+0.4
1,396,950	-				-2.3
1,396,950	-				-0.4
1,396,950	-				-0.2
1,396,950	-				-1.9
1,396,950	-				-0.6
1,396,950	-				-0.7
1,396,950	-				-0.9
1,396,967	+				-0.4
1,396,967	+				-0.2
1,396,967	+				-0.2
1,396,968	-				-1.2
1,396,982	+		LRK54_RS06500	0.10	-0.7
1,396,982	+		LRK54_RS06500	0.10	-1.3
1,396,982	+		LRK54_RS06500	0.10	-2.3
1,396,982	+		LRK54_RS06500	0.10	-1.1
1,396,982	+		LRK54_RS06500	0.10	-0.9
1,396,982	+		LRK54_RS06500	0.10	-0.7
1,396,982	+		LRK54_RS06500	0.10	+0.8
1,396,982	+		LRK54_RS06500	0.10	-0.6
1,396,982	+		LRK54_RS06500	0.10	-0.8
1,396,982	+		LRK54_RS06500	0.10	+0.1
1,396,982	+		LRK54_RS06500	0.10	-0.6
1,396,982	+		LRK54_RS06500	0.10	+0.1
1,396,982	+		LRK54_RS06500	0.10	-0.5
1,396,982	+		LRK54_RS06500	0.10	-0.6
1,396,982	+		LRK54_RS06500	0.10	-0.2
1,396,982	+		LRK54_RS06500	0.10	-1.5
1,396,982	+		LRK54_RS06500	0.10	+0.6
1,396,982	+		LRK54_RS06500	0.10	-0.9
1,396,982	+		LRK54_RS06500	0.10	-0.5
1,396,982	+		LRK54_RS06500	0.10	-1.4
1,396,983	-		LRK54_RS06500	0.10	+0.4
1,396,983	-		LRK54_RS06500	0.10	+1.2
1,396,983	-		LRK54_RS06500	0.10	+2.4
1,396,983	-		LRK54_RS06500	0.10	-0.0
1,396,983	-		LRK54_RS06500	0.10	-0.8
1,396,983	-		LRK54_RS06500	0.10	+0.2
1,396,983	-		LRK54_RS06500	0.10	-0.7
1,396,983	-		LRK54_RS06500	0.10	+0.4
1,396,983	-		LRK54_RS06500	0.10	-0.4
1,396,983	-		LRK54_RS06500	0.10	-1.0
1,396,983	-		LRK54_RS06500	0.10	+0.4
1,396,983	-		LRK54_RS06500	0.10	-0.6
1,396,983	-		LRK54_RS06500	0.10	-0.9
1,396,983	-		LRK54_RS06500	0.10	-0.4
1,396,983	-		LRK54_RS06500	0.10	-1.5
1,397,006	+		LRK54_RS06500	0.13	+0.8
1,397,006	+		LRK54_RS06500	0.13	-0.4
1,397,006	+		LRK54_RS06500	0.13	-0.2
1,397,006	+		LRK54_RS06500	0.13	-0.2
1,397,006	+		LRK54_RS06500	0.13	-0.3
1,397,006	+		LRK54_RS06500	0.13	+0.1
1,397,006	+		LRK54_RS06500	0.13	-1.3
1,397,006	+		LRK54_RS06500	0.13	-0.2
1,397,006	+		LRK54_RS06500	0.13	+0.2
1,397,006	+		LRK54_RS06500	0.13	-1.4
1,397,006	+		LRK54_RS06500	0.13	-0.7
1,397,007	-		LRK54_RS06500	0.13	+0.6
1,397,007	-		LRK54_RS06500	0.13	+1.4
1,397,007	-		LRK54_RS06500	0.13	-0.6
1,397,081	+		LRK54_RS06500	0.20	+0.1
1,397,082	-		LRK54_RS06500	0.20	+0.2
1,397,213	+		LRK54_RS06500	0.33	-0.9
1,397,213	+		LRK54_RS06500	0.33	-0.8
1,397,213	+		LRK54_RS06500	0.33	-0.0
1,397,213	+		LRK54_RS06500	0.33	-1.6
1,397,213	+		LRK54_RS06500	0.33	-0.5
1,397,213	+		LRK54_RS06500	0.33	+0.5
1,397,213	+		LRK54_RS06500	0.33	-2.1
1,397,213	+		LRK54_RS06500	0.33	+0.4
1,397,213	+		LRK54_RS06500	0.33	-0.2
1,397,213	+		LRK54_RS06500	0.33	-0.1
1,397,213	+		LRK54_RS06500	0.33	-1.9
1,397,213	+		LRK54_RS06500	0.33	-1.9
1,397,213	+		LRK54_RS06500	0.33	-1.5
1,397,214	-		LRK54_RS06500	0.33	-0.9
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