Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00905

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00900 and HSERO_RS00905 are separated by 257 nucleotidesHSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotidesHSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotides HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 (from data), at 187,220 to 187,945 _RS00900 HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 188,203 to 191,895 _RS00905 HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630 _RS00910 HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041 _RS00915 Position (kb) 188 189 190 191 192Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 187.682 kb on + strand, within HSERO_RS00900at 188.009 kb on + strandat 188.045 kb on - strandat 188.056 kb on + strandat 188.193 kb on + strandat 188.334 kb on - strandat 188.740 kb on + strand, within HSERO_RS00905at 188.741 kb on + strand, within HSERO_RS00905at 188.748 kb on - strand, within HSERO_RS00905at 188.759 kb on - strand, within HSERO_RS00905at 189.056 kb on + strand, within HSERO_RS00905at 189.208 kb on + strand, within HSERO_RS00905at 189.339 kb on + strand, within HSERO_RS00905at 189.347 kb on - strand, within HSERO_RS00905at 189.348 kb on + strand, within HSERO_RS00905at 189.628 kb on - strand, within HSERO_RS00905at 189.633 kb on - strandat 189.749 kb on + strand, within HSERO_RS00905at 189.843 kb on + strand, within HSERO_RS00905at 189.843 kb on + strand, within HSERO_RS00905at 189.885 kb on - strand, within HSERO_RS00905at 189.994 kb on + strand, within HSERO_RS00905at 190.002 kb on - strand, within HSERO_RS00905at 190.275 kb on - strand, within HSERO_RS00905at 190.275 kb on - strand, within HSERO_RS00905at 190.499 kb on + strand, within HSERO_RS00905at 190.505 kb on - strand, within HSERO_RS00905at 190.576 kb on - strand, within HSERO_RS00905at 190.724 kb on + strand, within HSERO_RS00905at 191.116 kb on - strand, within HSERO_RS00905at 191.363 kb on - strand, within HSERO_RS00905at 191.365 kb on + strand, within HSERO_RS00905at 191.410 kb on - strand, within HSERO_RS00905at 191.618 kb on - strandat 191.844 kb on - strandat 191.862 kb on + strandat 192.153 kb on + strand, within HSERO_RS00910at 192.293 kb on + strand, within HSERO_RS00910at 192.381 kb on + strand, within HSERO_RS00910at 192.404 kb on - strand, within HSERO_RS00910at 192.537 kb on + strand, within HSERO_RS00910at 192.588 kb on + strandat 192.624 kb on + strandat 192.882 kb on - strand, within HSERO_RS00915

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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187,682 + HSERO_RS00900 0.64 -5.4
188,009 + +0.2
188,045 - -3.3
188,056 + -3.3
188,193 + -4.8
188,334 - -2.9
188,740 + HSERO_RS00905 0.15 -4.5
188,741 + HSERO_RS00905 0.15 -3.5
188,748 - HSERO_RS00905 0.15 -1.6
188,759 - HSERO_RS00905 0.15 -5.3
189,056 + HSERO_RS00905 0.23 -4.0
189,208 + HSERO_RS00905 0.27 -4.6
189,339 + HSERO_RS00905 0.31 -4.9
189,347 - HSERO_RS00905 0.31 -3.9
189,348 + HSERO_RS00905 0.31 -3.6
189,628 - HSERO_RS00905 0.39 -4.2
189,633 - -0.3
189,749 + HSERO_RS00905 0.42 -5.1
189,843 + HSERO_RS00905 0.44 -2.1
189,843 + HSERO_RS00905 0.44 -3.8
189,885 - HSERO_RS00905 0.46 -5.2
189,994 + HSERO_RS00905 0.48 -3.3
190,002 - HSERO_RS00905 0.49 -4.3
190,275 - HSERO_RS00905 0.56 -4.7
190,275 - HSERO_RS00905 0.56 -2.6
190,499 + HSERO_RS00905 0.62 -3.3
190,505 - HSERO_RS00905 0.62 -4.2
190,576 - HSERO_RS00905 0.64 -2.8
190,724 + HSERO_RS00905 0.68 -6.2
191,116 - HSERO_RS00905 0.79 -5.6
191,363 - HSERO_RS00905 0.86 -4.2
191,365 + HSERO_RS00905 0.86 -5.2
191,410 - HSERO_RS00905 0.87 -2.8
191,618 - -3.5
191,844 - -4.7
191,862 + -2.1
192,153 + HSERO_RS00910 0.11 -1.1
192,293 + HSERO_RS00910 0.37 +0.1
192,381 + HSERO_RS00910 0.53 -1.2
192,404 - HSERO_RS00910 0.58 -0.7
192,537 + HSERO_RS00910 0.82 -1.2
192,588 + +0.7
192,624 + -0.6
192,882 - HSERO_RS00915 0.14 -0.4

Or see this region's nucleotide sequence