Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00870

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00860 and HSERO_RS00865 are separated by 23 nucleotidesHSERO_RS00865 and HSERO_RS00870 are separated by 317 nucleotidesHSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotides HSERO_RS00860: HSERO_RS00860 - AraC family transcriptional regulator, at 178,794 to 179,765 _RS00860 HSERO_RS00865: HSERO_RS00865 - AsnC family transcriptional regulator, at 179,789 to 180,253 _RS00865 HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component (from data), at 180,571 to 181,707 _RS00870 HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946 _RS00875 Position (kb) 180 181 182Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 179.594 kb on + strand, within HSERO_RS00860at 179.848 kb on - strand, within HSERO_RS00865at 179.880 kb on - strand, within HSERO_RS00865at 180.021 kb on - strand, within HSERO_RS00865at 180.029 kb on + strand, within HSERO_RS00865at 180.037 kb on - strand, within HSERO_RS00865at 180.037 kb on - strand, within HSERO_RS00865at 180.073 kb on + strand, within HSERO_RS00865at 180.086 kb on - strand, within HSERO_RS00865at 180.101 kb on - strand, within HSERO_RS00865at 180.111 kb on - strand, within HSERO_RS00865at 180.115 kb on + strandat 180.116 kb on + strand, within HSERO_RS00865at 180.118 kb on + strand, within HSERO_RS00865at 180.161 kb on + strand, within HSERO_RS00865at 180.194 kb on - strand, within HSERO_RS00865at 180.247 kb on + strandat 180.404 kb on + strandat 180.404 kb on + strandat 180.407 kb on + strandat 180.412 kb on - strandat 180.422 kb on - strandat 180.422 kb on - strandat 180.422 kb on - strandat 180.472 kb on - strandat 180.472 kb on - strandat 180.473 kb on + strandat 180.581 kb on - strandat 180.584 kb on + strandat 180.717 kb on - strand, within HSERO_RS00870at 180.862 kb on - strand, within HSERO_RS00870at 181.089 kb on - strand, within HSERO_RS00870at 181.146 kb on + strand, within HSERO_RS00870at 181.172 kb on - strand, within HSERO_RS00870at 181.185 kb on + strand, within HSERO_RS00870at 181.267 kb on + strand, within HSERO_RS00870at 181.275 kb on - strand, within HSERO_RS00870at 181.465 kb on + strand, within HSERO_RS00870at 181.465 kb on + strand, within HSERO_RS00870at 181.589 kb on - strand, within HSERO_RS00870at 181.763 kb on + strandat 181.763 kb on + strandat 181.824 kb on + strandat 181.906 kb on + strandat 181.914 kb on - strandat 181.972 kb on - strandat 182.195 kb on - strand, within HSERO_RS00875at 182.253 kb on + strand, within HSERO_RS00875at 182.276 kb on - strand, within HSERO_RS00875at 182.299 kb on - strand, within HSERO_RS00875at 182.321 kb on + strand, within HSERO_RS00875at 182.531 kb on - strand, within HSERO_RS00875at 182.558 kb on + strand, within HSERO_RS00875at 182.625 kb on - strand, within HSERO_RS00875at 182.653 kb on - strand, within HSERO_RS00875at 182.655 kb on + strand, within HSERO_RS00875

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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179,594 + HSERO_RS00860 0.82 +0.1
179,848 - HSERO_RS00865 0.13 -4.9
179,880 - HSERO_RS00865 0.20 -4.7
180,021 - HSERO_RS00865 0.50 -2.6
180,029 + HSERO_RS00865 0.52 -4.2
180,037 - HSERO_RS00865 0.53 -4.2
180,037 - HSERO_RS00865 0.53 -2.5
180,073 + HSERO_RS00865 0.61 -3.2
180,086 - HSERO_RS00865 0.64 -1.8
180,101 - HSERO_RS00865 0.67 -3.6
180,111 - HSERO_RS00865 0.69 -3.6
180,115 + +2.2
180,116 + HSERO_RS00865 0.70 -2.7
180,118 + HSERO_RS00865 0.71 -5.7
180,161 + HSERO_RS00865 0.80 -2.1
180,194 - HSERO_RS00865 0.87 -3.8
180,247 + -4.3
180,404 + -5.2
180,404 + -2.2
180,407 + -3.2
180,412 - -4.5
180,422 - -4.0
180,422 - -2.2
180,422 - -2.5
180,472 - -4.0
180,472 - -2.8
180,473 + -6.3
180,581 - -5.3
180,584 + -4.1
180,717 - HSERO_RS00870 0.13 -0.8
180,862 - HSERO_RS00870 0.26 -3.5
181,089 - HSERO_RS00870 0.46 -5.9
181,146 + HSERO_RS00870 0.51 -2.9
181,172 - HSERO_RS00870 0.53 -6.9
181,185 + HSERO_RS00870 0.54 -2.8
181,267 + HSERO_RS00870 0.61 -5.2
181,275 - HSERO_RS00870 0.62 -5.1
181,465 + HSERO_RS00870 0.79 +0.2
181,465 + HSERO_RS00870 0.79 -5.6
181,589 - HSERO_RS00870 0.90 -4.9
181,763 + -0.9
181,763 + +1.0
181,824 + -0.3
181,906 + -3.7
181,914 - -1.6
181,972 - -3.6
182,195 - HSERO_RS00875 0.26 -4.8
182,253 + HSERO_RS00875 0.31 -2.4
182,276 - HSERO_RS00875 0.34 -6.2
182,299 - HSERO_RS00875 0.36 -4.4
182,321 + HSERO_RS00875 0.38 -2.2
182,531 - HSERO_RS00875 0.59 -2.6
182,558 + HSERO_RS00875 0.62 -3.6
182,625 - HSERO_RS00875 0.68 -3.7
182,653 - HSERO_RS00875 0.71 -4.0
182,655 + HSERO_RS00875 0.71 -1.5

Or see this region's nucleotide sequence