Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31580 and BPHYT_RS31585 are separated by 3 nucleotides BPHYT_RS31585 and BPHYT_RS31590 are separated by 60 nucleotides BPHYT_RS31590 and BPHYT_RS31595 are separated by 479 nucleotides
BPHYT_RS31580: BPHYT_RS31580 - hypothetical protein, at 2,638,591 to 2,638,818
_RS31580
BPHYT_RS31585: BPHYT_RS31585 - universal stress protein UspA, at 2,638,822 to 2,639,256
_RS31585
BPHYT_RS31590: BPHYT_RS31590 - hypothetical protein, at 2,639,317 to 2,639,502
_RS31590
BPHYT_RS31595: BPHYT_RS31595 - hypothetical protein, at 2,639,982 to 2,640,674
_RS31595
Position (kb) 2639
2640 Strain fitness (log2 ratio) -1
0
1 at 2638.452 kb on + strand at 2638.453 kb on - strand at 2638.824 kb on - strand at 2638.856 kb on - strand at 2639.053 kb on + strand, within BPHYT_RS31585 at 2639.195 kb on - strand, within BPHYT_RS31585 at 2639.195 kb on - strand, within BPHYT_RS31585 at 2639.347 kb on + strand, within BPHYT_RS31590 at 2639.626 kb on - strand at 2639.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 2,638,452 + +0.3 2,638,453 - -1.2 2,638,824 - -0.2 2,638,856 - -1.4 2,639,053 + BPHYT_RS31585 0.53 +0.0 2,639,195 - BPHYT_RS31585 0.86 +0.2 2,639,195 - BPHYT_RS31585 0.86 +0.1 2,639,347 + BPHYT_RS31590 0.16 -0.7 2,639,626 - -0.1 2,639,654 + +0.4
Or see this region's nucleotide sequence