Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28960 and BPHYT_RS28965 are separated by 34 nucleotides BPHYT_RS28965 and BPHYT_RS28970 are separated by 320 nucleotides BPHYT_RS28970 and BPHYT_RS28975 are separated by 189 nucleotides
BPHYT_RS28960: BPHYT_RS28960 - histidine kinase, at 2,052,974 to 2,055,637
_RS28960
BPHYT_RS28965: BPHYT_RS28965 - hypothetical protein, at 2,055,672 to 2,056,592
_RS28965
BPHYT_RS28970: BPHYT_RS28970 - hypothetical protein, at 2,056,913 to 2,057,242
_RS28970
BPHYT_RS28975: BPHYT_RS28975 - transcriptional regulator, at 2,057,432 to 2,058,340
_RS28975
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2054.973 kb on - strand, within BPHYT_RS28960 at 2055.019 kb on + strand, within BPHYT_RS28960 at 2055.020 kb on - strand, within BPHYT_RS28960 at 2056.425 kb on + strand, within BPHYT_RS28965 at 2056.433 kb on + strand, within BPHYT_RS28965 at 2056.733 kb on + strand at 2057.249 kb on - strand at 2057.253 kb on + strand at 2057.261 kb on - strand at 2057.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 2,054,973 - BPHYT_RS28960 0.75 +0.0 2,055,019 + BPHYT_RS28960 0.77 +0.1 2,055,020 - BPHYT_RS28960 0.77 +0.1 2,056,425 + BPHYT_RS28965 0.82 -3.5 2,056,433 + BPHYT_RS28965 0.83 -0.5 2,056,733 + +1.0 2,057,249 - -0.7 2,057,253 + -0.6 2,057,261 - -0.4 2,057,392 - -0.2
Or see this region's nucleotide sequence