Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17970 and BPHYT_RS17975 overlap by 8 nucleotides BPHYT_RS17975 and BPHYT_RS17980 are separated by 167 nucleotides BPHYT_RS17980 and BPHYT_RS17985 are separated by 182 nucleotides
BPHYT_RS17970: BPHYT_RS17970 - thiol:disulfide interchange protein, at 4,058,285 to 4,060,165
_RS17970
BPHYT_RS17975: BPHYT_RS17975 - cytochrome C biogenesis protein, at 4,060,158 to 4,060,490
_RS17975
BPHYT_RS17980: BPHYT_RS17980 - 50S ribosomal protein L17, at 4,060,658 to 4,061,050
_RS17980
BPHYT_RS17985: BPHYT_RS17985 - DNA-directed RNA polymerase subunit alpha, at 4,061,233 to 4,062,210
_RS17985
Position (kb) 4060
4061 Strain fitness (log2 ratio) -2
-1
0
1 at 4060.160 kb on - strand at 4060.160 kb on - strand at 4060.273 kb on + strand, within BPHYT_RS17975 at 4060.273 kb on + strand, within BPHYT_RS17975 at 4060.274 kb on - strand, within BPHYT_RS17975 at 4060.361 kb on - strand, within BPHYT_RS17975 at 4060.530 kb on + strand at 4060.530 kb on + strand at 4060.531 kb on - strand at 4060.531 kb on - strand at 4060.531 kb on - strand at 4060.538 kb on - strand at 4060.538 kb on - strand at 4060.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 4,060,160 - -0.8 4,060,160 - -0.0 4,060,273 + BPHYT_RS17975 0.35 -1.8 4,060,273 + BPHYT_RS17975 0.35 -0.6 4,060,274 - BPHYT_RS17975 0.35 -0.3 4,060,361 - BPHYT_RS17975 0.61 -1.8 4,060,530 + +0.2 4,060,530 + +0.4 4,060,531 - -0.8 4,060,531 - -0.2 4,060,531 - +0.2 4,060,538 - -0.1 4,060,538 - +0.4 4,060,607 - -0.0
Or see this region's nucleotide sequence