Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15410 and BPHYT_RS15415 are separated by 607 nucleotides BPHYT_RS15415 and BPHYT_RS15420 are separated by 53 nucleotides BPHYT_RS15420 and BPHYT_RS15425 are separated by 82 nucleotides
BPHYT_RS15410: BPHYT_RS15410 - hypothetical protein, at 3,497,312 to 3,498,493
_RS15410
BPHYT_RS15415: BPHYT_RS15415 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,499,101 to 3,500,669
_RS15415
BPHYT_RS15420: BPHYT_RS15420 - lysine transporter LysE, at 3,500,723 to 3,501,400
_RS15420
BPHYT_RS15425: BPHYT_RS15425 - serine/threonine dehydratase, at 3,501,483 to 3,502,448
_RS15425
Position (kb)
3499
3500
3501 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3498.458 kb on - strand at 3498.458 kb on - strand at 3498.621 kb on + strand at 3498.621 kb on + strand at 3498.621 kb on + strand at 3498.621 kb on + strand at 3498.622 kb on - strand at 3498.742 kb on + strand at 3498.743 kb on - strand at 3498.743 kb on - strand at 3498.746 kb on + strand at 3498.845 kb on + strand at 3498.845 kb on + strand at 3498.846 kb on - strand at 3498.846 kb on - strand at 3498.876 kb on - strand at 3498.876 kb on - strand at 3498.979 kb on + strand at 3498.979 kb on + strand at 3498.997 kb on + strand at 3498.997 kb on + strand at 3498.997 kb on + strand at 3498.997 kb on + strand at 3499.019 kb on + strand at 3499.046 kb on + strand at 3499.117 kb on + strand at 3499.592 kb on - strand, within BPHYT_RS15415 at 3499.645 kb on + strand, within BPHYT_RS15415 at 3499.645 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.651 kb on + strand, within BPHYT_RS15415 at 3499.652 kb on - strand, within BPHYT_RS15415 at 3499.652 kb on - strand, within BPHYT_RS15415 at 3499.652 kb on - strand, within BPHYT_RS15415 at 3499.652 kb on - strand, within BPHYT_RS15415 at 3499.653 kb on + strand, within BPHYT_RS15415 at 3499.653 kb on + strand, within BPHYT_RS15415 at 3499.653 kb on + strand, within BPHYT_RS15415 at 3499.653 kb on + strand, within BPHYT_RS15415 at 3499.654 kb on - strand, within BPHYT_RS15415 at 3499.654 kb on - strand, within BPHYT_RS15415 at 3499.654 kb on - strand, within BPHYT_RS15415 at 3499.842 kb on + strand, within BPHYT_RS15415 at 3499.960 kb on - strand, within BPHYT_RS15415 at 3499.960 kb on - strand, within BPHYT_RS15415 at 3500.035 kb on - strand, within BPHYT_RS15415 at 3500.079 kb on + strand, within BPHYT_RS15415 at 3500.079 kb on + strand, within BPHYT_RS15415 at 3500.080 kb on - strand, within BPHYT_RS15415 at 3500.123 kb on + strand, within BPHYT_RS15415 at 3500.145 kb on + strand, within BPHYT_RS15415 at 3500.145 kb on + strand, within BPHYT_RS15415 at 3500.145 kb on + strand, within BPHYT_RS15415 at 3500.146 kb on - strand, within BPHYT_RS15415 at 3500.146 kb on - strand, within BPHYT_RS15415 at 3500.146 kb on - strand, within BPHYT_RS15415 at 3500.146 kb on - strand, within BPHYT_RS15415 at 3500.157 kb on + strand, within BPHYT_RS15415 at 3500.158 kb on - strand, within BPHYT_RS15415 at 3500.158 kb on - strand, within BPHYT_RS15415 at 3500.259 kb on + strand, within BPHYT_RS15415 at 3500.259 kb on + strand, within BPHYT_RS15415 at 3500.259 kb on + strand, within BPHYT_RS15415 at 3500.259 kb on + strand, within BPHYT_RS15415 at 3500.260 kb on - strand, within BPHYT_RS15415 at 3500.260 kb on - strand, within BPHYT_RS15415 at 3500.260 kb on - strand, within BPHYT_RS15415 at 3500.284 kb on - strand, within BPHYT_RS15415 at 3500.376 kb on + strand, within BPHYT_RS15415 at 3500.376 kb on + strand, within BPHYT_RS15415 at 3500.377 kb on - strand, within BPHYT_RS15415 at 3500.377 kb on - strand, within BPHYT_RS15415 at 3500.681 kb on + strand at 3500.681 kb on + strand at 3500.695 kb on + strand at 3500.696 kb on - strand at 3500.704 kb on + strand at 3500.782 kb on + strand at 3500.882 kb on + strand, within BPHYT_RS15420 at 3501.306 kb on + strand, within BPHYT_RS15420 at 3501.306 kb on + strand, within BPHYT_RS15420 at 3501.307 kb on - strand, within BPHYT_RS15420 at 3501.329 kb on + strand, within BPHYT_RS15420 at 3501.330 kb on - strand, within BPHYT_RS15420 at 3501.339 kb on - strand at 3501.339 kb on - strand at 3501.481 kb on + strand at 3501.481 kb on + strand at 3501.482 kb on - strand at 3501.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 3,498,458 - -0.1 3,498,458 - +0.3 3,498,621 + +0.5 3,498,621 + -0.2 3,498,621 + -1.8 3,498,621 + +0.4 3,498,622 - +1.0 3,498,742 + -0.1 3,498,743 - -0.5 3,498,743 - -0.6 3,498,746 + -0.7 3,498,845 + -0.0 3,498,845 + -0.2 3,498,846 - +0.6 3,498,846 - +0.1 3,498,876 - -0.2 3,498,876 - -0.0 3,498,979 + -1.0 3,498,979 + +0.3 3,498,997 + +0.6 3,498,997 + -0.3 3,498,997 + -0.3 3,498,997 + +1.8 3,499,019 + +0.1 3,499,046 + -1.3 3,499,117 + -3.0 3,499,592 - BPHYT_RS15415 0.31 -1.7 3,499,645 + BPHYT_RS15415 0.35 -2.5 3,499,645 + BPHYT_RS15415 0.35 +0.0 3,499,651 + BPHYT_RS15415 0.35 -2.7 3,499,651 + BPHYT_RS15415 0.35 -1.8 3,499,651 + BPHYT_RS15415 0.35 -3.1 3,499,651 + BPHYT_RS15415 0.35 -2.8 3,499,651 + BPHYT_RS15415 0.35 -3.0 3,499,651 + BPHYT_RS15415 0.35 -4.4 3,499,651 + BPHYT_RS15415 0.35 -2.8 3,499,652 - BPHYT_RS15415 0.35 -3.6 3,499,652 - BPHYT_RS15415 0.35 -0.6 3,499,652 - BPHYT_RS15415 0.35 -1.5 3,499,652 - BPHYT_RS15415 0.35 -2.8 3,499,653 + BPHYT_RS15415 0.35 -2.7 3,499,653 + BPHYT_RS15415 0.35 -4.1 3,499,653 + BPHYT_RS15415 0.35 -1.9 3,499,653 + BPHYT_RS15415 0.35 -2.0 3,499,654 - BPHYT_RS15415 0.35 -2.3 3,499,654 - BPHYT_RS15415 0.35 -3.8 3,499,654 - BPHYT_RS15415 0.35 -3.1 3,499,842 + BPHYT_RS15415 0.47 -2.3 3,499,960 - BPHYT_RS15415 0.55 -2.4 3,499,960 - BPHYT_RS15415 0.55 -4.0 3,500,035 - BPHYT_RS15415 0.60 -2.8 3,500,079 + BPHYT_RS15415 0.62 +0.1 3,500,079 + BPHYT_RS15415 0.62 -3.3 3,500,080 - BPHYT_RS15415 0.62 -1.5 3,500,123 + BPHYT_RS15415 0.65 -3.5 3,500,145 + BPHYT_RS15415 0.67 -3.1 3,500,145 + BPHYT_RS15415 0.67 -3.9 3,500,145 + BPHYT_RS15415 0.67 -1.7 3,500,146 - BPHYT_RS15415 0.67 -1.5 3,500,146 - BPHYT_RS15415 0.67 -2.0 3,500,146 - BPHYT_RS15415 0.67 -1.4 3,500,146 - BPHYT_RS15415 0.67 -2.2 3,500,157 + BPHYT_RS15415 0.67 -2.5 3,500,158 - BPHYT_RS15415 0.67 -2.4 3,500,158 - BPHYT_RS15415 0.67 -3.1 3,500,259 + BPHYT_RS15415 0.74 -3.0 3,500,259 + BPHYT_RS15415 0.74 -2.5 3,500,259 + BPHYT_RS15415 0.74 -2.5 3,500,259 + BPHYT_RS15415 0.74 -3.2 3,500,260 - BPHYT_RS15415 0.74 -2.3 3,500,260 - BPHYT_RS15415 0.74 -2.7 3,500,260 - BPHYT_RS15415 0.74 -2.5 3,500,284 - BPHYT_RS15415 0.75 -3.0 3,500,376 + BPHYT_RS15415 0.81 -2.3 3,500,376 + BPHYT_RS15415 0.81 -3.1 3,500,377 - BPHYT_RS15415 0.81 -2.9 3,500,377 - BPHYT_RS15415 0.81 -2.9 3,500,681 + +0.5 3,500,681 + +0.1 3,500,695 + +0.2 3,500,696 - -0.5 3,500,704 + +0.6 3,500,782 + +0.2 3,500,882 + BPHYT_RS15420 0.23 -0.1 3,501,306 + BPHYT_RS15420 0.86 +0.5 3,501,306 + BPHYT_RS15420 0.86 +0.1 3,501,307 - BPHYT_RS15420 0.86 +0.3 3,501,329 + BPHYT_RS15420 0.89 +0.3 3,501,330 - BPHYT_RS15420 0.90 -0.5 3,501,339 - +0.8 3,501,339 - +0.3 3,501,481 + +0.8 3,501,481 + +0.1 3,501,482 - -0.2 3,501,482 - +0.4
Or see this region's nucleotide sequence