Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03365

Experiment: LB, pH5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03360 and BPHYT_RS03365 are separated by 58 nucleotidesBPHYT_RS03365 and BPHYT_RS03370 are separated by 211 nucleotides BPHYT_RS03360: BPHYT_RS03360 - tRNA-specific 2-thiouridylase MnmA, at 756,778 to 757,929 _RS03360 BPHYT_RS03365: BPHYT_RS03365 - NUDIX hydrolase, at 757,988 to 758,467 _RS03365 BPHYT_RS03370: BPHYT_RS03370 - NAD(P) transhydrogenase subunit alpha, at 758,679 to 759,821 _RS03370 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1at 757.930 kb on - strandat 757.930 kb on - strandat 758.052 kb on + strand, within BPHYT_RS03365at 758.052 kb on + strand, within BPHYT_RS03365at 758.053 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.755 kb on - strandat 758.829 kb on - strand, within BPHYT_RS03370at 758.966 kb on + strand, within BPHYT_RS03370at 758.966 kb on + strand, within BPHYT_RS03370at 759.090 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.367 kb on - strand, within BPHYT_RS03370

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH5
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757,930 - -0.3
757,930 - -0.2
758,052 + BPHYT_RS03365 0.13 -1.8
758,052 + BPHYT_RS03365 0.13 -1.4
758,053 - BPHYT_RS03365 0.14 +0.2
758,251 - BPHYT_RS03365 0.55 +0.3
758,251 - BPHYT_RS03365 0.55 -0.1
758,251 - BPHYT_RS03365 0.55 -0.1
758,251 - BPHYT_RS03365 0.55 -0.7
758,251 - BPHYT_RS03365 0.55 -0.3
758,755 - +0.4
758,829 - BPHYT_RS03370 0.13 +0.3
758,966 + BPHYT_RS03370 0.25 +0.6
758,966 + BPHYT_RS03370 0.25 +0.9
759,090 + BPHYT_RS03370 0.36 +0.0
759,103 + BPHYT_RS03370 0.37 +0.3
759,103 + BPHYT_RS03370 0.37 -0.0
759,103 + BPHYT_RS03370 0.37 +0.3
759,367 - BPHYT_RS03370 0.60 +0.2

Or see this region's nucleotide sequence