Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19005

Experiment: CDM1 without Histidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Histidine
2,040,671	-				-1.3
2,040,671	-				+0.6
2,040,671	-				+0.1
2,040,677	-				+1.3
2,040,703	-				+1.0
2,040,726	-		BBR_RS19000	0.10	-1.6
2,040,726	-		BBR_RS19000	0.10	+0.1
2,040,735	+		BBR_RS19000	0.11	-0.5
2,040,741	+		BBR_RS19000	0.12	-2.7
2,040,741	+		BBR_RS19000	0.12	-1.4
2,040,760	-		BBR_RS19000	0.13	+0.6
2,040,760	-		BBR_RS19000	0.13	+1.1
2,040,760	-		BBR_RS19000	0.13	+0.2
2,040,770	-		BBR_RS19000	0.14	-0.3
2,040,775	+		BBR_RS19000	0.15	-0.9
2,040,775	+		BBR_RS19000	0.15	-1.3
2,040,775	+		BBR_RS19000	0.15	-0.0
2,040,775	+		BBR_RS19000	0.15	-2.0
2,040,775	+		BBR_RS19000	0.15	-0.7
2,040,775	+		BBR_RS19000	0.15	-0.7
2,040,775	+		BBR_RS19000	0.15	-0.6
2,040,775	+		BBR_RS19000	0.15	-0.1
2,040,775	+		BBR_RS19000	0.15	-1.0
2,040,779	-		BBR_RS19000	0.15	+0.3
2,040,780	+		BBR_RS19000	0.15	-1.0
2,040,780	+		BBR_RS19000	0.15	-1.3
2,040,783	+		BBR_RS19000	0.16	-1.2
2,040,783	-		BBR_RS19000	0.16	-0.4
2,040,793	-		BBR_RS19000	0.17	-0.2
2,040,805	+		BBR_RS19000	0.18	-1.0
2,040,840	+		BBR_RS19000	0.21	-0.7
2,040,842	+		BBR_RS19000	0.22	+0.3
2,040,848	-		BBR_RS19000	0.22	+0.4
2,040,848	-		BBR_RS19000	0.22	-1.5
2,040,850	-		BBR_RS19000	0.22	-0.8
2,040,852	+		BBR_RS19000	0.23	-2.1
2,040,858	+		BBR_RS19000	0.23	+0.1
2,040,858	-		BBR_RS19000	0.23	+0.0
2,040,867	+		BBR_RS19000	0.24	-1.9
2,040,882	+		BBR_RS19000	0.25	-0.5
2,040,882	+		BBR_RS19000	0.25	-0.9
2,040,887	+		BBR_RS19000	0.26	-0.3
2,040,887	+		BBR_RS19000	0.26	-1.1
2,040,890	-		BBR_RS19000	0.26	+0.6
2,040,890	-		BBR_RS19000	0.26	-0.1
2,040,890	-		BBR_RS19000	0.26	+0.1
2,040,890	-		BBR_RS19000	0.26	-0.1
2,040,890	-		BBR_RS19000	0.26	-0.9
2,040,890	-		BBR_RS19000	0.26	-0.9
2,040,890	-		BBR_RS19000	0.26	-0.5
2,040,892	+		BBR_RS19000	0.26	+0.1
2,040,903	+		BBR_RS19000	0.28	+0.4
2,040,905	+		BBR_RS19000	0.28	-1.1
2,040,994	-		BBR_RS19000	0.36	+0.5
2,040,996	+		BBR_RS19000	0.37	-0.3
2,041,023	+		BBR_RS19000	0.39	-0.2
2,041,023	+		BBR_RS19000	0.39	+0.5
2,041,023	+		BBR_RS19000	0.39	-0.3
2,041,026	-		BBR_RS19000	0.40	-0.3
2,041,031	-		BBR_RS19000	0.40	+0.1
2,041,031	-		BBR_RS19000	0.40	-1.2
2,041,033	+		BBR_RS19000	0.40	+0.3
2,041,041	-		BBR_RS19000	0.41	-1.3
2,041,054	+		BBR_RS19000	0.42	+0.3
2,041,064	-		BBR_RS19000	0.43	+0.1
2,041,064	-		BBR_RS19000	0.43	+0.4
2,041,075	+		BBR_RS19000	0.44	-0.4
2,041,096	-		BBR_RS19000	0.47	-0.0
2,041,103	+		BBR_RS19000	0.47	+0.2
2,041,103	+		BBR_RS19000	0.47	+0.0
2,041,108	+		BBR_RS19000	0.48	-1.1
2,041,111	-		BBR_RS19000	0.48	-0.6
2,041,114	+		BBR_RS19000	0.48	-0.0
2,041,116	-		BBR_RS19000	0.48	+0.5
2,041,116	-		BBR_RS19000	0.48	-0.7
2,041,119	+		BBR_RS19000	0.49	-0.1
2,041,175	-		BBR_RS19000	0.54	-0.1
2,041,182	-		BBR_RS19000	0.55	-1.0
2,041,188	-		BBR_RS19000	0.56	+0.3
2,041,205	-		BBR_RS19000	0.57	-0.4
2,041,205	-		BBR_RS19000	0.57	-0.0
2,041,214	-		BBR_RS19000	0.58	-2.9
2,041,227	-		BBR_RS19000	0.59	-1.4
2,041,227	-		BBR_RS19000	0.59	-1.6
2,041,237	-		BBR_RS19000	0.60	-0.5
2,041,256	+		BBR_RS19000	0.62	-2.2
2,041,262	-		BBR_RS19000	0.63	+0.3
2,041,278	-		BBR_RS19000	0.64	+0.1
2,041,278	-		BBR_RS19000	0.64	-0.7
2,041,286	+		BBR_RS19000	0.65	+0.1
2,041,288	+		BBR_RS19000	0.65	-2.7
2,041,294	-		BBR_RS19000	0.66	-0.3
2,041,309	+		BBR_RS19000	0.67	-0.6
2,041,309	+		BBR_RS19000	0.67	-1.9
2,041,309	+		BBR_RS19000	0.67	-0.3
2,041,309	+		BBR_RS19000	0.67	-0.2
2,041,309	+		BBR_RS19000	0.67	-1.5
2,041,311	-		BBR_RS19000	0.68	+0.2
2,041,311	-		BBR_RS19000	0.68	-0.7
2,041,315	+		BBR_RS19000	0.68	+1.1
2,041,317	-		BBR_RS19000	0.68	-0.1
2,041,317	-		BBR_RS19000	0.68	+0.8
2,041,317	-		BBR_RS19000	0.68	+0.2
2,041,317	-		BBR_RS19000	0.68	-0.5
2,041,317	-		BBR_RS19000	0.68	+0.5
2,041,343	+		BBR_RS19000	0.71	-0.0
2,041,351	+		BBR_RS19000	0.72	-0.9
2,041,359	+		BBR_RS19000	0.72	+0.3
2,041,359	+		BBR_RS19000	0.72	+1.3
2,041,361	+		BBR_RS19000	0.73	-1.1
2,041,384	-		BBR_RS19000	0.75	-0.6
2,041,387	+		BBR_RS19000	0.75	+0.1
2,041,393	-		BBR_RS19000	0.76	+1.1
2,041,393	-		BBR_RS19000	0.76	+0.6
2,041,464	+		BBR_RS19000	0.83	+0.2
2,041,479	+		BBR_RS19000	0.84	+0.6
2,041,485	+		BBR_RS19000	0.85	-1.6
2,041,491	-		BBR_RS19000	0.85	-0.8
2,041,521	+		BBR_RS19000	0.88	+1.0
2,041,533	+		BBR_RS19000	0.89	+0.4
2,041,538	+				+0.2
2,041,538	+				-0.3
2,041,541	-				+0.5
2,041,541	-				-1.5
2,041,545	+				-0.6
2,041,545	+				-0.2
2,041,553	-				+0.5
2,041,554	+				-0.3
2,041,554	+				+0.6
2,041,576	+				-1.6
2,041,576	+				-1.1
2,041,591	-				+1.4
2,041,591	-				-0.7
2,041,613	+				+1.4
2,041,621	-				-0.1
2,041,635	+				+0.1
2,041,643	+				-1.3
2,041,645	+				+0.8
2,041,648	+				-0.2
2,041,648	+				-0.3
2,041,648	+				+0.1
2,041,648	+				+0.9
2,041,648	+				+0.4
2,041,648	+				+0.6
2,041,648	+				+0.7
2,041,648	+				-0.1
2,041,656	-				+0.4
2,041,656	-				+0.7
2,041,656	-				+0.5
2,041,656	-				-2.3
2,041,656	-				-0.0
2,041,656	-				+0.5
2,041,656	-				+0.9
2,041,656	-				+0.1
2,041,656	-				-0.8
2,041,673	-				-0.8
2,041,683	-				+0.9
2,041,704	+				+0.0
2,041,706	+				-0.9
2,041,707	-				-0.8
2,041,707	-				-1.0
2,041,707	-				+0.9
2,041,714	-				-2.5
2,041,714	-				+0.4
2,041,743	+		BBR_RS19005	0.11	+0.8
2,041,756	-		BBR_RS19005	0.13	+0.5
2,041,771	-		BBR_RS19005	0.15	+0.9
2,041,774	+		BBR_RS19005	0.15	+0.4
2,041,782	+		BBR_RS19005	0.16	-0.7
2,041,782	+		BBR_RS19005	0.16	-0.1
2,041,782	+		BBR_RS19005	0.16	-0.2
2,041,790	-		BBR_RS19005	0.18	+0.3
2,041,790	-		BBR_RS19005	0.18	+2.2
2,041,836	-		BBR_RS19005	0.24	-0.7
2,041,898	-		BBR_RS19005	0.33	+1.3
2,041,910	+		BBR_RS19005	0.35	-0.1
2,041,920	-		BBR_RS19005	0.36	+1.0
2,041,941	+		BBR_RS19005	0.40	-0.9
2,041,967	+		BBR_RS19005	0.43	+0.4
2,041,975	-		BBR_RS19005	0.45	-0.0
2,041,975	-		BBR_RS19005	0.45	-0.4
2,041,975	-		BBR_RS19005	0.45	+0.5
2,041,975	-		BBR_RS19005	0.45	+0.7
2,041,975	-		BBR_RS19005	0.45	+1.6
2,041,980	-		BBR_RS19005	0.45	-0.9
2,041,982	+		BBR_RS19005	0.46	-0.1
2,041,987	+		BBR_RS19005	0.46	-1.0
2,041,995	-		BBR_RS19005	0.47	-4.9
2,041,995	-		BBR_RS19005	0.47	+0.4
2,041,995	-		BBR_RS19005	0.47	+1.0
2,042,001	+		BBR_RS19005	0.48	+0.1
2,042,001	+		BBR_RS19005	0.48	-0.3
2,042,006	+		BBR_RS19005	0.49	+1.3
2,042,014	-		BBR_RS19005	0.50	+1.2
2,042,014	-		BBR_RS19005	0.50	-1.9
2,042,021	+		BBR_RS19005	0.51	+1.6
2,042,021	+		BBR_RS19005	0.51	+0.5
2,042,021	+		BBR_RS19005	0.51	+0.1
2,042,021	+		BBR_RS19005	0.51	+0.4
2,042,021	+		BBR_RS19005	0.51	+1.3
2,042,022	+		BBR_RS19005	0.51	-0.1
2,042,029	-		BBR_RS19005	0.52	+1.0
2,042,029	-		BBR_RS19005	0.52	-3.5
2,042,032	+		BBR_RS19005	0.53	+1.9
2,042,032	+		BBR_RS19005	0.53	+0.4
2,042,040	-		BBR_RS19005	0.54	+0.1
2,042,047	-		BBR_RS19005	0.55	+1.5
2,042,051	+		BBR_RS19005	0.56	+1.3
2,042,051	+		BBR_RS19005	0.56	-1.9
2,042,058	+		BBR_RS19005	0.57	+0.4
2,042,058	+		BBR_RS19005	0.57	-2.5
2,042,058	+		BBR_RS19005	0.57	+0.4
2,042,060	+		BBR_RS19005	0.57	+0.9
2,042,074	+		BBR_RS19005	0.59	+0.1
2,042,076	-		BBR_RS19005	0.59	-0.0
2,042,087	+		BBR_RS19005	0.61	+0.4
2,042,089	+		BBR_RS19005	0.61	+1.0
2,042,089	+		BBR_RS19005	0.61	-0.7
2,042,089	+		BBR_RS19005	0.61	-1.1
2,042,097	-		BBR_RS19005	0.62	-0.4
2,042,097	-		BBR_RS19005	0.62	-0.1
2,042,097	-		BBR_RS19005	0.62	+1.7
2,042,103	-		BBR_RS19005	0.63	+0.1
2,042,110	+		BBR_RS19005	0.64	+1.6
2,042,127	-		BBR_RS19005	0.67	-0.5
2,042,127	-		BBR_RS19005	0.67	+0.9
2,042,129	+		BBR_RS19005	0.67	-2.6
2,042,146	+		BBR_RS19005	0.69	-0.2
2,042,158	+		BBR_RS19005	0.71	-1.0
2,042,158	+		BBR_RS19005	0.71	+0.3
2,042,161	-		BBR_RS19005	0.72	+0.1
2,042,163	+		BBR_RS19005	0.72	+0.4
2,042,166	-		BBR_RS19005	0.72	+0.5
2,042,166	-		BBR_RS19005	0.72	+0.9
2,042,166	-		BBR_RS19005	0.72	-1.2
2,042,169	-		BBR_RS19005	0.73	+0.8
2,042,169	-		BBR_RS19005	0.73	-1.8
2,042,169	-		BBR_RS19005	0.73	+0.8
2,042,171	-		BBR_RS19005	0.73	+1.7
2,042,184	-		BBR_RS19005	0.75	+0.8
2,042,222	+		BBR_RS19005	0.81	+0.0
2,042,229	-		BBR_RS19005	0.82	+0.4
2,042,242	+		BBR_RS19005	0.84	+0.1
2,042,251	-		BBR_RS19005	0.85	-1.7
2,042,255	+		BBR_RS19005	0.85	-1.6
2,042,255	+		BBR_RS19005	0.85	+0.7
2,042,262	+		BBR_RS19005	0.86	+0.1
2,042,263	-		BBR_RS19005	0.87	+1.8
2,042,270	-		BBR_RS19005	0.88	+1.4
2,042,284	+		BBR_RS19005	0.90	+0.9
2,042,284	+		BBR_RS19005	0.90	+0.1
2,042,289	+				-0.1
2,042,289	+				-0.2
2,042,289	+				-1.3
2,042,289	+				+0.0
2,042,292	-				+0.3
2,042,292	-				-0.0
2,042,297	-				+0.7
2,042,297	-				-1.2
2,042,297	-				+0.6
2,042,308	+				-1.2
2,042,316	-				-0.1
2,042,336	-				+0.6
2,042,351	+				-0.7
2,042,354	-				-0.2
2,042,382	-				-1.1
2,042,422	+				-2.6
2,042,422	+				-0.7
2,042,430	-				-0.2
2,042,430	-				+0.1
2,042,433	+				-1.6
2,042,441	-				+0.3
2,042,445	+				-0.4
2,042,455	+				-0.4
2,042,468	-				-1.3
2,042,468	-				-1.1
2,042,474	-				+0.3
2,042,479	-				+0.8
2,042,489	+				-2.3
2,042,489	+				-1.1
2,042,527	-				+0.9
2,042,550	+				-2.6
2,042,566	-				+0.3
2,042,578	+				-2.1
2,042,593	+				+0.3
2,042,593	+				-0.9
2,042,593	+				+0.5
2,042,598	+				+0.0
2,042,598	+				-1.3
2,042,601	-				-0.1
2,042,663	-				+0.9
2,042,748	-				+0.8
2,042,761	+				+1.1
2,042,778	+				-0.3
2,042,783	-				+0.9
2,042,783	-				+0.8
2,042,841	+				-2.3
2,042,843	-				+1.2
2,042,861	+				-0.7
2,042,862	-				+2.1
2,042,869	-				+0.5
2,042,878	+				-1.6
2,042,886	-				-0.7
2,042,927	-				-1.7
2,042,927	-				-1.3
2,042,927	-				+0.1
2,042,929	+				-1.8
2,042,935	-				+0.7
2,042,996	-				+0.5
2,042,997	+				-0.2
2,043,005	-				-0.5
2,043,010	-				-0.4
2,043,014	-				-0.4
2,043,026	+				-4.6
2,043,032	+				-1.9
2,043,034	-				+0.1
2,043,052	+				-0.4
2,043,052	+				-2.0
2,043,065	+				-0.4
2,043,065	+				-1.9
2,043,076	+				-0.7
2,043,109	-				-0.4
2,043,121	+		BBR_RS19010	0.11	-1.4
2,043,129	+		BBR_RS19010	0.12	-2.4
2,043,136	+		BBR_RS19010	0.12	-2.7
2,043,141	+		BBR_RS19010	0.13	-2.8
2,043,159	-		BBR_RS19010	0.14	+0.5
2,043,172	-		BBR_RS19010	0.15	+0.8
2,043,172	-		BBR_RS19010	0.15	+0.3
2,043,180	-		BBR_RS19010	0.16	-0.4
2,043,192	-		BBR_RS19010	0.17	-1.0
2,043,192	-		BBR_RS19010	0.17	+0.7
2,043,197	-		BBR_RS19010	0.17	+1.3
2,043,202	-		BBR_RS19010	0.18	-0.3
2,043,205	-		BBR_RS19010	0.18	+1.3
2,043,205	-		BBR_RS19010	0.18	+0.9
2,043,213	+		BBR_RS19010	0.19	-1.9
2,043,219	+		BBR_RS19010	0.19	-2.1
2,043,249	-		BBR_RS19010	0.22	+0.5
2,043,249	-		BBR_RS19010	0.22	+0.7
2,043,310	+		BBR_RS19010	0.27	+0.1
2,043,320	+		BBR_RS19010	0.28	-1.6
2,043,320	+		BBR_RS19010	0.28	-1.4
2,043,328	-		BBR_RS19010	0.28	+0.9
2,043,339	-		BBR_RS19010	0.29	-0.2
2,043,346	+		BBR_RS19010	0.30	+0.0
2,043,346	+		BBR_RS19010	0.30	-0.6
2,043,346	+		BBR_RS19010	0.30	-0.2
2,043,346	+		BBR_RS19010	0.30	-2.1
2,043,354	+		BBR_RS19010	0.30	+1.1