Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21815

Experiment: Pimelic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS21805 and ABZR87_RS21810 are separated by 49 nucleotidesABZR87_RS21810 and ABZR87_RS21815 overlap by 4 nucleotidesABZR87_RS21815 and ABZR87_RS21820 overlap by 4 nucleotides ABZR87_RS21805: ABZR87_RS21805 - sugar kinase, at 1,276,404 to 1,277,336 _RS21805 ABZR87_RS21810: ABZR87_RS21810 - enoyl-CoA hydratase, at 1,277,386 to 1,278,174 _RS21810 ABZR87_RS21815: ABZR87_RS21815 - MarR family winged helix-turn-helix transcriptional regulator, at 1,278,171 to 1,278,605 _RS21815 ABZR87_RS21820: ABZR87_RS21820 - alpha/beta hydrolase, at 1,278,602 to 1,279,489 _RS21820 Position (kb) 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1at 1277.265 kb on + strandat 1277.265 kb on + strandat 1277.266 kb on - strandat 1277.612 kb on + strand, within ABZR87_RS21810at 1277.613 kb on - strand, within ABZR87_RS21810at 1278.081 kb on - strand, within ABZR87_RS21810at 1278.249 kb on - strand, within ABZR87_RS21815at 1278.577 kb on + strandat 1278.578 kb on - strandat 1278.578 kb on - strandat 1278.578 kb on - strandat 1278.578 kb on - strandat 1278.578 kb on - strandat 1278.578 kb on - strandat 1278.832 kb on - strand, within ABZR87_RS21820at 1278.901 kb on - strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.988 kb on - strand, within ABZR87_RS21820at 1279.303 kb on - strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.309 kb on - strand, within ABZR87_RS21820at 1279.309 kb on - strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.577 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
remove
1,277,265 + +0.8
1,277,265 + -0.2
1,277,266 - +0.9
1,277,612 + ABZR87_RS21810 0.29 +0.5
1,277,613 - ABZR87_RS21810 0.29 +0.1
1,278,081 - ABZR87_RS21810 0.88 -0.8
1,278,249 - ABZR87_RS21815 0.18 -3.1
1,278,577 + -0.2
1,278,578 - -1.2
1,278,578 - -1.2
1,278,578 - -1.3
1,278,578 - -1.5
1,278,578 - +0.1
1,278,578 - -0.4
1,278,832 - ABZR87_RS21820 0.26 +0.5
1,278,901 - ABZR87_RS21820 0.34 -0.2
1,278,987 + ABZR87_RS21820 0.43 +0.0
1,278,987 + ABZR87_RS21820 0.43 -0.8
1,278,987 + ABZR87_RS21820 0.43 +0.1
1,278,988 - ABZR87_RS21820 0.43 +0.4
1,279,303 - ABZR87_RS21820 0.79 +0.3
1,279,308 + ABZR87_RS21820 0.80 +0.9
1,279,308 + ABZR87_RS21820 0.80 -0.8
1,279,308 + ABZR87_RS21820 0.80 +0.5
1,279,308 + ABZR87_RS21820 0.80 -0.4
1,279,308 + ABZR87_RS21820 0.80 -0.1
1,279,309 - ABZR87_RS21820 0.80 +1.0
1,279,309 - ABZR87_RS21820 0.80 -2.9
1,279,359 + ABZR87_RS21820 0.85 +0.6
1,279,359 + ABZR87_RS21820 0.85 -0.6
1,279,359 + ABZR87_RS21820 0.85 +0.2
1,279,359 + ABZR87_RS21820 0.85 +0.3
1,279,359 + ABZR87_RS21820 0.85 -0.0
1,279,359 + ABZR87_RS21820 0.85 +0.6
1,279,359 + ABZR87_RS21820 0.85 -0.0
1,279,360 - ABZR87_RS21820 0.85 +0.9
1,279,360 - ABZR87_RS21820 0.85 -0.8
1,279,360 - ABZR87_RS21820 0.85 +0.7
1,279,360 - ABZR87_RS21820 0.85 +0.1
1,279,577 + -0.9

Or see this region's nucleotide sequence