Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19070 and ABZR87_RS19075 are separated by 108 nucleotides ABZR87_RS19075 and ABZR87_RS19080 are separated by 101 nucleotides ABZR87_RS19080 and ABZR87_RS19085 are separated by 398 nucleotides
ABZR87_RS19070: ABZR87_RS19070 - MFS transporter, at 640,161 to 641,480
_RS19070
ABZR87_RS19075: ABZR87_RS19075 - hypothetical protein, at 641,589 to 641,762
_RS19075
ABZR87_RS19080: ABZR87_RS19080 - Zn-dependent hydrolase, at 641,864 to 643,087
_RS19080
ABZR87_RS19085: ABZR87_RS19085 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 643,486 to 644,211
_RS19085
Position (kb) 641
642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.381 kb on - strand at 641.381 kb on - strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.386 kb on + strand at 641.387 kb on - strand at 641.387 kb on - strand at 641.387 kb on - strand at 641.389 kb on + strand at 641.389 kb on + strand at 641.390 kb on - strand at 641.395 kb on + strand at 641.395 kb on + strand at 641.396 kb on - strand at 641.396 kb on - strand at 641.396 kb on - strand at 641.588 kb on + strand at 641.588 kb on + strand at 641.588 kb on + strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.699 kb on + strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.700 kb on - strand, within ABZR87_RS19075 at 641.745 kb on + strand at 641.770 kb on - strand at 641.770 kb on - strand at 641.810 kb on - strand at 641.810 kb on - strand at 641.810 kb on - strand at 642.146 kb on + strand, within ABZR87_RS19080 at 642.147 kb on - strand, within ABZR87_RS19080 at 642.256 kb on + strand, within ABZR87_RS19080 at 642.256 kb on + strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.257 kb on - strand, within ABZR87_RS19080 at 642.371 kb on + strand, within ABZR87_RS19080 at 642.413 kb on + strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.414 kb on - strand, within ABZR87_RS19080 at 642.427 kb on + strand, within ABZR87_RS19080 at 642.609 kb on + strand, within ABZR87_RS19080 at 642.609 kb on + strand, within ABZR87_RS19080 at 642.610 kb on - strand, within ABZR87_RS19080 at 643.103 kb on - strand at 643.103 kb on - strand at 643.103 kb on - strand at 643.108 kb on + strand at 643.109 kb on - strand at 643.118 kb on + strand at 643.118 kb on + strand at 643.141 kb on + strand at 643.142 kb on - strand at 643.170 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.206 kb on - strand at 643.206 kb on - strand at 643.243 kb on - strand at 643.378 kb on + strand at 643.378 kb on + strand at 643.379 kb on - strand at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.011 kb on - strand, within ABZR87_RS19085 at 644.067 kb on - strand, within ABZR87_RS19085
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 641,381 - -0.1 641,381 - -1.5 641,386 + +0.3 641,386 + +0.6 641,386 + +1.0 641,386 + +0.8 641,386 + -0.4 641,386 + +1.2 641,386 + +0.9 641,386 + +0.8 641,387 - +0.0 641,387 - +0.3 641,387 - -0.4 641,389 + +2.0 641,389 + -0.5 641,390 - -0.7 641,395 + +1.4 641,395 + -0.0 641,396 - -0.8 641,396 - +0.4 641,396 - -1.5 641,588 + +1.2 641,588 + +0.7 641,588 + +0.5 641,589 - -0.1 641,589 - -1.5 641,589 - -0.7 641,589 - -1.1 641,699 + ABZR87_RS19075 0.63 +1.2 641,700 - ABZR87_RS19075 0.64 -0.6 641,700 - ABZR87_RS19075 0.64 -0.3 641,700 - ABZR87_RS19075 0.64 -0.5 641,745 + +0.9 641,770 - +0.4 641,770 - +1.2 641,810 - +0.2 641,810 - -0.2 641,810 - +0.0 642,146 + ABZR87_RS19080 0.23 +1.1 642,147 - ABZR87_RS19080 0.23 -1.6 642,256 + ABZR87_RS19080 0.32 +0.2 642,256 + ABZR87_RS19080 0.32 -0.1 642,257 - ABZR87_RS19080 0.32 -1.2 642,257 - ABZR87_RS19080 0.32 +0.3 642,257 - ABZR87_RS19080 0.32 +0.7 642,371 + ABZR87_RS19080 0.41 +1.4 642,413 + ABZR87_RS19080 0.45 -2.4 642,414 - ABZR87_RS19080 0.45 -0.7 642,414 - ABZR87_RS19080 0.45 +0.4 642,414 - ABZR87_RS19080 0.45 +0.8 642,427 + ABZR87_RS19080 0.46 -1.6 642,609 + ABZR87_RS19080 0.61 +0.2 642,609 + ABZR87_RS19080 0.61 +1.3 642,610 - ABZR87_RS19080 0.61 +1.1 643,103 - +0.0 643,103 - +0.2 643,103 - +0.3 643,108 + -0.6 643,109 - -0.5 643,118 + -0.3 643,118 + +0.2 643,141 + -0.3 643,142 - -1.5 643,170 + +0.5 643,205 + +0.1 643,205 + +0.8 643,205 + +0.0 643,205 + +0.0 643,205 + -0.2 643,206 - +1.1 643,206 - -0.2 643,243 - +0.6 643,378 + +0.5 643,378 + +0.5 643,379 - -0.7 643,961 + ABZR87_RS19085 0.65 -0.6 643,961 + ABZR87_RS19085 0.65 +0.1 643,961 + ABZR87_RS19085 0.65 +0.2 643,962 - ABZR87_RS19085 0.66 +0.7 643,962 - ABZR87_RS19085 0.66 -1.4 643,962 - ABZR87_RS19085 0.66 -0.6 644,010 + ABZR87_RS19085 0.72 -0.4 644,010 + ABZR87_RS19085 0.72 -0.0 644,011 - ABZR87_RS19085 0.72 -1.3 644,067 - ABZR87_RS19085 0.80 +0.1
Or see this region's nucleotide sequence