Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18350

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18345 and ABZR87_RS18350 are separated by 99 nucleotidesABZR87_RS18350 and ABZR87_RS18355 overlap by 4 nucleotides ABZR87_RS18345: ABZR87_RS18345 - ABC transporter substrate-binding protein, at 481,997 to 482,983 _RS18345 ABZR87_RS18350: ABZR87_RS18350 - sugar ABC transporter ATP-binding protein, at 483,083 to 484,672 _RS18350 ABZR87_RS18355: ABZR87_RS18355 - ABC transporter permease, at 484,669 to 485,718 _RS18355 Position (kb) 483 484 485Strain fitness (log2 ratio) -2 -1 0 1at 482.264 kb on + strand, within ABZR87_RS18345at 482.265 kb on - strand, within ABZR87_RS18345at 482.405 kb on + strand, within ABZR87_RS18345at 482.406 kb on - strand, within ABZR87_RS18345at 482.585 kb on + strand, within ABZR87_RS18345at 482.585 kb on + strand, within ABZR87_RS18345at 482.585 kb on + strand, within ABZR87_RS18345at 482.687 kb on + strand, within ABZR87_RS18345at 482.688 kb on - strand, within ABZR87_RS18345at 482.688 kb on - strand, within ABZR87_RS18345at 482.978 kb on + strandat 482.978 kb on + strandat 482.978 kb on + strandat 482.978 kb on + strandat 482.978 kb on + strandat 482.978 kb on + strandat 483.058 kb on + strandat 483.058 kb on + strandat 483.058 kb on + strandat 483.058 kb on + strandat 483.059 kb on - strandat 483.362 kb on - strand, within ABZR87_RS18350at 483.374 kb on + strand, within ABZR87_RS18350at 483.374 kb on + strand, within ABZR87_RS18350at 483.375 kb on - strand, within ABZR87_RS18350at 483.375 kb on - strand, within ABZR87_RS18350at 483.523 kb on + strand, within ABZR87_RS18350at 483.524 kb on - strand, within ABZR87_RS18350at 483.731 kb on + strand, within ABZR87_RS18350at 483.732 kb on - strand, within ABZR87_RS18350at 483.752 kb on - strand, within ABZR87_RS18350at 484.038 kb on + strand, within ABZR87_RS18350at 484.227 kb on - strand, within ABZR87_RS18350at 484.265 kb on + strand, within ABZR87_RS18350at 484.266 kb on - strand, within ABZR87_RS18350at 484.266 kb on - strand, within ABZR87_RS18350at 484.515 kb on + strandat 484.516 kb on - strandat 484.724 kb on + strandat 484.791 kb on + strand, within ABZR87_RS18355at 484.791 kb on + strand, within ABZR87_RS18355at 484.805 kb on - strand, within ABZR87_RS18355at 484.896 kb on + strand, within ABZR87_RS18355at 484.897 kb on - strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.988 kb on - strand, within ABZR87_RS18355at 485.174 kb on - strand, within ABZR87_RS18355at 485.174 kb on - strand, within ABZR87_RS18355at 485.176 kb on + strand, within ABZR87_RS18355at 485.176 kb on + strand, within ABZR87_RS18355at 485.177 kb on - strand, within ABZR87_RS18355at 485.207 kb on - strand, within ABZR87_RS18355at 485.207 kb on - strand, within ABZR87_RS18355at 485.233 kb on + strand, within ABZR87_RS18355at 485.233 kb on + strand, within ABZR87_RS18355at 485.374 kb on + strand, within ABZR87_RS18355at 485.374 kb on + strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.576 kb on - strand, within ABZR87_RS18355at 485.584 kb on + strand, within ABZR87_RS18355at 485.585 kb on - strand, within ABZR87_RS18355

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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482,264 + ABZR87_RS18345 0.27 -0.3
482,265 - ABZR87_RS18345 0.27 -0.1
482,405 + ABZR87_RS18345 0.41 +0.5
482,406 - ABZR87_RS18345 0.41 +0.9
482,585 + ABZR87_RS18345 0.60 +0.7
482,585 + ABZR87_RS18345 0.60 +0.0
482,585 + ABZR87_RS18345 0.60 -0.3
482,687 + ABZR87_RS18345 0.70 -0.7
482,688 - ABZR87_RS18345 0.70 +0.1
482,688 - ABZR87_RS18345 0.70 -0.5
482,978 + +0.7
482,978 + -1.6
482,978 + +0.0
482,978 + -0.3
482,978 + +0.0
482,978 + +0.1
483,058 + -0.8
483,058 + +0.9
483,058 + -0.2
483,058 + +0.1
483,059 - -0.4
483,362 - ABZR87_RS18350 0.18 +0.1
483,374 + ABZR87_RS18350 0.18 +0.4
483,374 + ABZR87_RS18350 0.18 +0.1
483,375 - ABZR87_RS18350 0.18 -0.2
483,375 - ABZR87_RS18350 0.18 +0.7
483,523 + ABZR87_RS18350 0.28 +0.7
483,524 - ABZR87_RS18350 0.28 +0.1
483,731 + ABZR87_RS18350 0.41 -0.6
483,732 - ABZR87_RS18350 0.41 +0.0
483,752 - ABZR87_RS18350 0.42 -0.1
484,038 + ABZR87_RS18350 0.60 +0.1
484,227 - ABZR87_RS18350 0.72 +1.1
484,265 + ABZR87_RS18350 0.74 +1.6
484,266 - ABZR87_RS18350 0.74 +0.1
484,266 - ABZR87_RS18350 0.74 +0.4
484,515 + -0.1
484,516 - -0.1
484,724 + -0.3
484,791 + ABZR87_RS18355 0.12 +0.3
484,791 + ABZR87_RS18355 0.12 +0.3
484,805 - ABZR87_RS18355 0.13 -0.1
484,896 + ABZR87_RS18355 0.22 -2.1
484,897 - ABZR87_RS18355 0.22 -0.3
484,987 + ABZR87_RS18355 0.30 -0.1
484,987 + ABZR87_RS18355 0.30 +0.3
484,987 + ABZR87_RS18355 0.30 +0.1
484,988 - ABZR87_RS18355 0.30 +0.1
485,174 - ABZR87_RS18355 0.48 -0.2
485,174 - ABZR87_RS18355 0.48 +0.4
485,176 + ABZR87_RS18355 0.48 +0.7
485,176 + ABZR87_RS18355 0.48 -0.2
485,177 - ABZR87_RS18355 0.48 +0.6
485,207 - ABZR87_RS18355 0.51 -0.1
485,207 - ABZR87_RS18355 0.51 -0.1
485,233 + ABZR87_RS18355 0.54 +0.2
485,233 + ABZR87_RS18355 0.54 +0.6
485,374 + ABZR87_RS18355 0.67 +0.6
485,374 + ABZR87_RS18355 0.67 +0.2
485,375 - ABZR87_RS18355 0.67 +0.5
485,375 - ABZR87_RS18355 0.67 -0.4
485,375 - ABZR87_RS18355 0.67 +0.6
485,375 - ABZR87_RS18355 0.67 -0.7
485,576 - ABZR87_RS18355 0.86 +0.8
485,584 + ABZR87_RS18355 0.87 +0.5
485,585 - ABZR87_RS18355 0.87 -0.3

Or see this region's nucleotide sequence