Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17545

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17540 and ABZR87_RS17545 are separated by 61 nucleotidesABZR87_RS17545 and ABZR87_RS17550 are separated by 77 nucleotides ABZR87_RS17540: ABZR87_RS17540 - SMP-30/gluconolactonase/LRE family protein, at 296,786 to 297,736 _RS17540 ABZR87_RS17545: ABZR87_RS17545 - MFS transporter, at 297,798 to 299,162 _RS17545 ABZR87_RS17550: ABZR87_RS17550 - MFS transporter, at 299,240 to 300,565 _RS17550 Position (kb) 297 298 299 300Strain fitness (log2 ratio) -1 0 1at 296.966 kb on + strand, within ABZR87_RS17540at 296.966 kb on + strand, within ABZR87_RS17540at 296.966 kb on + strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 297.038 kb on + strand, within ABZR87_RS17540at 297.150 kb on - strand, within ABZR87_RS17540at 297.150 kb on - strand, within ABZR87_RS17540at 297.221 kb on + strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.365 kb on + strand, within ABZR87_RS17540at 297.366 kb on - strand, within ABZR87_RS17540at 297.366 kb on - strand, within ABZR87_RS17540at 297.449 kb on - strand, within ABZR87_RS17540at 297.455 kb on + strand, within ABZR87_RS17540at 297.540 kb on + strand, within ABZR87_RS17540at 297.541 kb on - strand, within ABZR87_RS17540at 297.750 kb on + strandat 297.751 kb on - strandat 297.751 kb on - strandat 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.943 kb on - strand, within ABZR87_RS17545at 297.943 kb on - strand, within ABZR87_RS17545at 297.954 kb on + strand, within ABZR87_RS17545at 297.954 kb on + strand, within ABZR87_RS17545at 297.955 kb on - strand, within ABZR87_RS17545at 297.955 kb on - strand, within ABZR87_RS17545at 298.059 kb on + strand, within ABZR87_RS17545at 298.059 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.252 kb on - strand, within ABZR87_RS17545at 298.511 kb on - strand, within ABZR87_RS17545at 298.794 kb on + strand, within ABZR87_RS17545at 298.794 kb on + strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.946 kb on + strand, within ABZR87_RS17545at 299.043 kb on + strandat 299.044 kb on - strandat 299.177 kb on + strandat 299.178 kb on - strandat 299.186 kb on - strandat 299.186 kb on - strandat 299.186 kb on - strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.333 kb on + strandat 299.364 kb on + strandat 299.364 kb on + strandat 299.365 kb on - strandat 299.365 kb on - strandat 299.450 kb on + strand, within ABZR87_RS17550at 299.451 kb on - strand, within ABZR87_RS17550at 299.582 kb on + strand, within ABZR87_RS17550at 299.582 kb on + strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.642 kb on + strand, within ABZR87_RS17550at 299.643 kb on - strand, within ABZR87_RS17550at 299.722 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.984 kb on + strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 300.006 kb on + strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.065 kb on - strand, within ABZR87_RS17550at 300.116 kb on + strand, within ABZR87_RS17550

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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296,966 + ABZR87_RS17540 0.19 -0.1
296,966 + ABZR87_RS17540 0.19 -0.9
296,966 + ABZR87_RS17540 0.19 +0.1
296,967 - ABZR87_RS17540 0.19 +0.7
296,967 - ABZR87_RS17540 0.19 +0.2
296,967 - ABZR87_RS17540 0.19 +0.5
296,967 - ABZR87_RS17540 0.19 +0.5
297,038 + ABZR87_RS17540 0.26 +0.5
297,150 - ABZR87_RS17540 0.38 +0.3
297,150 - ABZR87_RS17540 0.38 +1.3
297,221 + ABZR87_RS17540 0.46 +0.7
297,222 - ABZR87_RS17540 0.46 -0.7
297,222 - ABZR87_RS17540 0.46 +0.2
297,222 - ABZR87_RS17540 0.46 -0.2
297,365 + ABZR87_RS17540 0.61 -0.4
297,366 - ABZR87_RS17540 0.61 +0.5
297,366 - ABZR87_RS17540 0.61 -0.2
297,449 - ABZR87_RS17540 0.70 +0.4
297,455 + ABZR87_RS17540 0.70 -0.4
297,540 + ABZR87_RS17540 0.79 -0.3
297,541 - ABZR87_RS17540 0.79 -0.4
297,750 + -1.1
297,751 - +0.1
297,751 - +0.0
297,942 + ABZR87_RS17545 0.11 -0.0
297,942 + ABZR87_RS17545 0.11 -0.0
297,942 + ABZR87_RS17545 0.11 +0.8
297,942 + ABZR87_RS17545 0.11 +0.3
297,942 + ABZR87_RS17545 0.11 -0.5
297,943 - ABZR87_RS17545 0.11 +0.1
297,943 - ABZR87_RS17545 0.11 -0.9
297,954 + ABZR87_RS17545 0.11 -0.2
297,954 + ABZR87_RS17545 0.11 -0.5
297,955 - ABZR87_RS17545 0.12 +0.2
297,955 - ABZR87_RS17545 0.12 +0.5
298,059 + ABZR87_RS17545 0.19 -0.4
298,059 + ABZR87_RS17545 0.19 +0.8
298,245 + ABZR87_RS17545 0.33 -0.2
298,245 + ABZR87_RS17545 0.33 +0.4
298,245 + ABZR87_RS17545 0.33 -0.0
298,245 + ABZR87_RS17545 0.33 +0.5
298,246 - ABZR87_RS17545 0.33 -0.1
298,246 - ABZR87_RS17545 0.33 +0.5
298,246 - ABZR87_RS17545 0.33 -0.0
298,246 - ABZR87_RS17545 0.33 +0.1
298,246 - ABZR87_RS17545 0.33 -1.2
298,246 - ABZR87_RS17545 0.33 +0.2
298,246 - ABZR87_RS17545 0.33 -0.3
298,252 - ABZR87_RS17545 0.33 -0.8
298,511 - ABZR87_RS17545 0.52 +1.3
298,794 + ABZR87_RS17545 0.73 -0.1
298,794 + ABZR87_RS17545 0.73 +0.2
298,795 - ABZR87_RS17545 0.73 +0.2
298,795 - ABZR87_RS17545 0.73 +0.0
298,795 - ABZR87_RS17545 0.73 +0.1
298,795 - ABZR87_RS17545 0.73 -0.0
298,946 + ABZR87_RS17545 0.84 +0.4
299,043 + -0.8
299,044 - -0.0
299,177 + -0.4
299,178 - -0.2
299,186 - -1.5
299,186 - +0.9
299,186 - +0.1
299,189 + -0.2
299,189 + -0.1
299,189 + +0.2
299,189 + +0.4
299,333 + -0.0
299,364 + -1.4
299,364 + +0.3
299,365 - -0.4
299,365 - +0.1
299,450 + ABZR87_RS17550 0.16 +0.3
299,451 - ABZR87_RS17550 0.16 +0.5
299,582 + ABZR87_RS17550 0.26 -0.1
299,582 + ABZR87_RS17550 0.26 +0.0
299,583 - ABZR87_RS17550 0.26 -1.0
299,583 - ABZR87_RS17550 0.26 -0.2
299,642 + ABZR87_RS17550 0.30 +0.2
299,643 - ABZR87_RS17550 0.30 -0.1
299,722 + ABZR87_RS17550 0.36 +0.6
299,911 + ABZR87_RS17550 0.51 -1.6
299,911 + ABZR87_RS17550 0.51 +0.5
299,911 + ABZR87_RS17550 0.51 +0.3
299,912 - ABZR87_RS17550 0.51 +0.0
299,912 - ABZR87_RS17550 0.51 -0.9
299,912 - ABZR87_RS17550 0.51 -0.2
299,984 + ABZR87_RS17550 0.56 -0.0
299,985 - ABZR87_RS17550 0.56 -0.1
299,985 - ABZR87_RS17550 0.56 +0.0
300,006 + ABZR87_RS17550 0.58 +0.3
300,007 - ABZR87_RS17550 0.58 +0.7
300,007 - ABZR87_RS17550 0.58 -0.3
300,064 + ABZR87_RS17550 0.62 +0.1
300,064 + ABZR87_RS17550 0.62 +0.4
300,065 - ABZR87_RS17550 0.62 +0.1
300,116 + ABZR87_RS17550 0.66 -0.3

Or see this region's nucleotide sequence