Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17540

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotidesABZR87_RS17535 and ABZR87_RS17540 are separated by 5 nucleotidesABZR87_RS17540 and ABZR87_RS17545 are separated by 61 nucleotides ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830 _RS17530 ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780 _RS17535 ABZR87_RS17540: ABZR87_RS17540 - SMP-30/gluconolactonase/LRE family protein, at 296,786 to 297,736 _RS17540 ABZR87_RS17545: ABZR87_RS17545 - MFS transporter, at 297,798 to 299,162 _RS17545 Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1at 295.828 kb on + strandat 295.828 kb on + strandat 295.828 kb on + strandat 295.829 kb on - strandat 295.829 kb on - strandat 295.829 kb on - strandat 295.829 kb on - strandat 296.002 kb on - strand, within ABZR87_RS17535at 296.342 kb on + strand, within ABZR87_RS17535at 296.367 kb on + strand, within ABZR87_RS17535at 296.368 kb on - strand, within ABZR87_RS17535at 296.368 kb on - strand, within ABZR87_RS17535at 296.419 kb on - strand, within ABZR87_RS17535at 296.655 kb on - strand, within ABZR87_RS17535at 296.707 kb on - strandat 296.707 kb on - strandat 296.966 kb on + strand, within ABZR87_RS17540at 296.966 kb on + strand, within ABZR87_RS17540at 296.966 kb on + strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 296.967 kb on - strand, within ABZR87_RS17540at 297.038 kb on + strand, within ABZR87_RS17540at 297.150 kb on - strand, within ABZR87_RS17540at 297.150 kb on - strand, within ABZR87_RS17540at 297.221 kb on + strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.222 kb on - strand, within ABZR87_RS17540at 297.365 kb on + strand, within ABZR87_RS17540at 297.366 kb on - strand, within ABZR87_RS17540at 297.366 kb on - strand, within ABZR87_RS17540at 297.449 kb on - strand, within ABZR87_RS17540at 297.455 kb on + strand, within ABZR87_RS17540at 297.540 kb on + strand, within ABZR87_RS17540at 297.541 kb on - strand, within ABZR87_RS17540at 297.750 kb on + strandat 297.751 kb on - strandat 297.751 kb on - strandat 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.942 kb on + strand, within ABZR87_RS17545at 297.943 kb on - strand, within ABZR87_RS17545at 297.943 kb on - strand, within ABZR87_RS17545at 297.954 kb on + strand, within ABZR87_RS17545at 297.954 kb on + strand, within ABZR87_RS17545at 297.955 kb on - strand, within ABZR87_RS17545at 297.955 kb on - strand, within ABZR87_RS17545at 298.059 kb on + strand, within ABZR87_RS17545at 298.059 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.252 kb on - strand, within ABZR87_RS17545at 298.511 kb on - strand, within ABZR87_RS17545

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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295,828 + +0.6
295,828 + -0.3
295,828 + -0.1
295,829 - -0.5
295,829 - +0.1
295,829 - +0.6
295,829 - -0.0
296,002 - ABZR87_RS17535 0.18 +0.6
296,342 + ABZR87_RS17535 0.54 -0.7
296,367 + ABZR87_RS17535 0.56 +0.0
296,368 - ABZR87_RS17535 0.57 -0.1
296,368 - ABZR87_RS17535 0.57 +0.4
296,419 - ABZR87_RS17535 0.62 -1.2
296,655 - ABZR87_RS17535 0.87 -0.4
296,707 - +0.8
296,707 - -0.6
296,966 + ABZR87_RS17540 0.19 -0.1
296,966 + ABZR87_RS17540 0.19 -0.9
296,966 + ABZR87_RS17540 0.19 +0.1
296,967 - ABZR87_RS17540 0.19 +0.7
296,967 - ABZR87_RS17540 0.19 +0.2
296,967 - ABZR87_RS17540 0.19 +0.5
296,967 - ABZR87_RS17540 0.19 +0.5
297,038 + ABZR87_RS17540 0.26 +0.5
297,150 - ABZR87_RS17540 0.38 +0.3
297,150 - ABZR87_RS17540 0.38 +1.3
297,221 + ABZR87_RS17540 0.46 +0.7
297,222 - ABZR87_RS17540 0.46 -0.7
297,222 - ABZR87_RS17540 0.46 +0.2
297,222 - ABZR87_RS17540 0.46 -0.2
297,365 + ABZR87_RS17540 0.61 -0.4
297,366 - ABZR87_RS17540 0.61 +0.5
297,366 - ABZR87_RS17540 0.61 -0.2
297,449 - ABZR87_RS17540 0.70 +0.4
297,455 + ABZR87_RS17540 0.70 -0.4
297,540 + ABZR87_RS17540 0.79 -0.3
297,541 - ABZR87_RS17540 0.79 -0.4
297,750 + -1.1
297,751 - +0.1
297,751 - +0.0
297,942 + ABZR87_RS17545 0.11 -0.0
297,942 + ABZR87_RS17545 0.11 -0.0
297,942 + ABZR87_RS17545 0.11 +0.8
297,942 + ABZR87_RS17545 0.11 +0.3
297,942 + ABZR87_RS17545 0.11 -0.5
297,943 - ABZR87_RS17545 0.11 +0.1
297,943 - ABZR87_RS17545 0.11 -0.9
297,954 + ABZR87_RS17545 0.11 -0.2
297,954 + ABZR87_RS17545 0.11 -0.5
297,955 - ABZR87_RS17545 0.12 +0.2
297,955 - ABZR87_RS17545 0.12 +0.5
298,059 + ABZR87_RS17545 0.19 -0.4
298,059 + ABZR87_RS17545 0.19 +0.8
298,245 + ABZR87_RS17545 0.33 -0.2
298,245 + ABZR87_RS17545 0.33 +0.4
298,245 + ABZR87_RS17545 0.33 -0.0
298,245 + ABZR87_RS17545 0.33 +0.5
298,246 - ABZR87_RS17545 0.33 -0.1
298,246 - ABZR87_RS17545 0.33 +0.5
298,246 - ABZR87_RS17545 0.33 -0.0
298,246 - ABZR87_RS17545 0.33 +0.1
298,246 - ABZR87_RS17545 0.33 -1.2
298,246 - ABZR87_RS17545 0.33 +0.2
298,246 - ABZR87_RS17545 0.33 -0.3
298,252 - ABZR87_RS17545 0.33 -0.8
298,511 - ABZR87_RS17545 0.52 +1.3

Or see this region's nucleotide sequence