Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17515 and ABZR87_RS17520 overlap by 4 nucleotides ABZR87_RS17520 and ABZR87_RS17525 are separated by 8 nucleotides ABZR87_RS17525 and ABZR87_RS17530 are separated by 170 nucleotides ABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotides
ABZR87_RS17515: ABZR87_RS17515 - voltage-gated chloride channel family protein, at 292,360 to 293,640
_RS17515
ABZR87_RS17520: ABZR87_RS17520 - GNAT family protein, at 293,637 to 294,242
_RS17520
ABZR87_RS17525: ABZR87_RS17525 - helix-turn-helix domain-containing protein, at 294,251 to 294,961
_RS17525
ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830
_RS17530
ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780
_RS17535
Position (kb) 294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.335 kb on + strand, within ABZR87_RS17515 at 293.335 kb on + strand, within ABZR87_RS17515 at 293.336 kb on - strand, within ABZR87_RS17515 at 293.336 kb on - strand, within ABZR87_RS17515 at 293.336 kb on - strand, within ABZR87_RS17515 at 293.368 kb on + strand, within ABZR87_RS17515 at 293.368 kb on + strand, within ABZR87_RS17515 at 293.369 kb on - strand, within ABZR87_RS17515 at 293.440 kb on - strand, within ABZR87_RS17515 at 293.525 kb on - strand at 293.525 kb on - strand at 293.525 kb on - strand at 293.525 kb on - strand at 293.525 kb on - strand at 293.525 kb on - strand at 293.551 kb on + strand at 293.552 kb on - strand at 293.783 kb on + strand, within ABZR87_RS17520 at 293.784 kb on - strand, within ABZR87_RS17520 at 294.073 kb on + strand, within ABZR87_RS17520 at 294.073 kb on + strand, within ABZR87_RS17520 at 294.073 kb on + strand, within ABZR87_RS17520 at 294.073 kb on + strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.074 kb on - strand, within ABZR87_RS17520 at 294.261 kb on + strand at 294.261 kb on + strand at 294.262 kb on - strand at 294.262 kb on - strand at 294.262 kb on - strand at 294.283 kb on + strand at 294.283 kb on + strand at 294.283 kb on + strand at 294.283 kb on + strand at 294.284 kb on - strand at 294.483 kb on - strand, within ABZR87_RS17525 at 294.501 kb on + strand, within ABZR87_RS17525 at 294.501 kb on + strand, within ABZR87_RS17525 at 294.501 kb on + strand, within ABZR87_RS17525 at 294.502 kb on - strand, within ABZR87_RS17525 at 294.502 kb on - strand, within ABZR87_RS17525 at 294.651 kb on + strand, within ABZR87_RS17525 at 294.651 kb on + strand, within ABZR87_RS17525 at 294.651 kb on + strand, within ABZR87_RS17525 at 294.651 kb on + strand, within ABZR87_RS17525 at 294.652 kb on - strand, within ABZR87_RS17525 at 294.652 kb on - strand, within ABZR87_RS17525 at 294.652 kb on - strand, within ABZR87_RS17525 at 294.652 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.655 kb on - strand, within ABZR87_RS17525 at 294.735 kb on + strand, within ABZR87_RS17525 at 294.735 kb on + strand, within ABZR87_RS17525 at 294.735 kb on + strand, within ABZR87_RS17525 at 294.736 kb on - strand, within ABZR87_RS17525 at 294.736 kb on - strand, within ABZR87_RS17525 at 294.750 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.801 kb on + strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.802 kb on - strand, within ABZR87_RS17525 at 294.835 kb on - strand, within ABZR87_RS17525 at 294.835 kb on - strand, within ABZR87_RS17525 at 295.038 kb on + strand at 295.064 kb on + strand at 295.064 kb on + strand at 295.066 kb on + strand at 295.761 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 293,335 + ABZR87_RS17515 0.76 +0.3 293,335 + ABZR87_RS17515 0.76 +0.4 293,336 - ABZR87_RS17515 0.76 +0.2 293,336 - ABZR87_RS17515 0.76 -0.1 293,336 - ABZR87_RS17515 0.76 +0.5 293,368 + ABZR87_RS17515 0.79 -0.3 293,368 + ABZR87_RS17515 0.79 -0.7 293,369 - ABZR87_RS17515 0.79 -1.0 293,440 - ABZR87_RS17515 0.84 +0.4 293,525 - -0.0 293,525 - +1.1 293,525 - +0.1 293,525 - +0.3 293,525 - +0.6 293,525 - -0.5 293,551 + +0.0 293,552 - +0.5 293,783 + ABZR87_RS17520 0.24 -0.3 293,784 - ABZR87_RS17520 0.24 +0.5 294,073 + ABZR87_RS17520 0.72 -0.2 294,073 + ABZR87_RS17520 0.72 +0.5 294,073 + ABZR87_RS17520 0.72 -1.3 294,073 + ABZR87_RS17520 0.72 +2.6 294,074 - ABZR87_RS17520 0.72 +0.6 294,074 - ABZR87_RS17520 0.72 -0.2 294,074 - ABZR87_RS17520 0.72 +0.4 294,074 - ABZR87_RS17520 0.72 +0.1 294,074 - ABZR87_RS17520 0.72 -2.1 294,074 - ABZR87_RS17520 0.72 -1.0 294,261 + +0.6 294,261 + -1.3 294,262 - +0.1 294,262 - -0.4 294,262 - +0.1 294,283 + -0.9 294,283 + +0.7 294,283 + -0.0 294,283 + +0.8 294,284 - +0.1 294,483 - ABZR87_RS17525 0.33 +0.1 294,501 + ABZR87_RS17525 0.35 -0.5 294,501 + ABZR87_RS17525 0.35 -1.5 294,501 + ABZR87_RS17525 0.35 -0.8 294,502 - ABZR87_RS17525 0.35 -0.1 294,502 - ABZR87_RS17525 0.35 -1.4 294,651 + ABZR87_RS17525 0.56 -1.1 294,651 + ABZR87_RS17525 0.56 -0.7 294,651 + ABZR87_RS17525 0.56 -2.1 294,651 + ABZR87_RS17525 0.56 -1.0 294,652 - ABZR87_RS17525 0.56 -0.0 294,652 - ABZR87_RS17525 0.56 -0.4 294,652 - ABZR87_RS17525 0.56 -0.1 294,652 - ABZR87_RS17525 0.56 -1.3 294,655 - ABZR87_RS17525 0.57 -1.7 294,655 - ABZR87_RS17525 0.57 -0.2 294,655 - ABZR87_RS17525 0.57 -0.3 294,655 - ABZR87_RS17525 0.57 -0.4 294,655 - ABZR87_RS17525 0.57 +0.7 294,655 - ABZR87_RS17525 0.57 -1.1 294,735 + ABZR87_RS17525 0.68 -1.3 294,735 + ABZR87_RS17525 0.68 +0.1 294,735 + ABZR87_RS17525 0.68 -0.6 294,736 - ABZR87_RS17525 0.68 -1.9 294,736 - ABZR87_RS17525 0.68 -0.5 294,750 + ABZR87_RS17525 0.70 -0.6 294,801 + ABZR87_RS17525 0.77 +0.9 294,801 + ABZR87_RS17525 0.77 -1.3 294,801 + ABZR87_RS17525 0.77 +0.0 294,801 + ABZR87_RS17525 0.77 -0.5 294,801 + ABZR87_RS17525 0.77 -0.5 294,801 + ABZR87_RS17525 0.77 -1.3 294,802 - ABZR87_RS17525 0.77 -1.1 294,802 - ABZR87_RS17525 0.77 -1.0 294,802 - ABZR87_RS17525 0.77 +0.5 294,802 - ABZR87_RS17525 0.77 -1.4 294,802 - ABZR87_RS17525 0.77 +0.2 294,802 - ABZR87_RS17525 0.77 -1.8 294,802 - ABZR87_RS17525 0.77 +0.1 294,802 - ABZR87_RS17525 0.77 +0.2 294,802 - ABZR87_RS17525 0.77 -0.4 294,802 - ABZR87_RS17525 0.77 -0.4 294,802 - ABZR87_RS17525 0.77 -0.7 294,802 - ABZR87_RS17525 0.77 -0.8 294,802 - ABZR87_RS17525 0.77 +0.0 294,802 - ABZR87_RS17525 0.77 -1.1 294,802 - ABZR87_RS17525 0.77 -0.2 294,835 - ABZR87_RS17525 0.82 -0.2 294,835 - ABZR87_RS17525 0.82 -0.4 295,038 + -0.3 295,064 + +1.2 295,064 + +2.2 295,066 + +0.6 295,761 + +0.5 295,828 + +0.6 295,828 + -0.3 295,828 + -0.1 295,829 - -0.5 295,829 - +0.1 295,829 - +0.6 295,829 - -0.0
Or see this region's nucleotide sequence