Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16635 and ABZR87_RS16640 are separated by 173 nucleotides ABZR87_RS16640 and ABZR87_RS16645 are separated by 2 nucleotides ABZR87_RS16645 and ABZR87_RS16650 are separated by 79 nucleotides ABZR87_RS16650 and ABZR87_RS16655 are separated by 99 nucleotides
ABZR87_RS16635: ABZR87_RS16635 - MFS family transporter, at 82,554 to 83,858
_RS16635
ABZR87_RS16640: ABZR87_RS16640 - addiction module antidote protein, at 84,032 to 84,334
_RS16640
ABZR87_RS16645: ABZR87_RS16645 - type II toxin-antitoxin system RelE/ParE family toxin, at 84,337 to 84,636
_RS16645
ABZR87_RS16650: ABZR87_RS16650 - MFS transporter, at 84,716 to 85,930
_RS16650
ABZR87_RS16655: ABZR87_RS16655 - GntR family transcriptional regulator, at 86,030 to 86,866
_RS16655
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.726 kb on - strand, within ABZR87_RS16635 at 83.743 kb on + strand at 83.743 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.749 kb on + strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.750 kb on - strand at 83.853 kb on - strand at 83.853 kb on - strand at 83.853 kb on - strand at 83.894 kb on + strand at 83.895 kb on - strand at 83.997 kb on + strand at 83.997 kb on + strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.034 kb on - strand at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.126 kb on + strand, within ABZR87_RS16640 at 84.127 kb on - strand, within ABZR87_RS16640 at 84.127 kb on - strand, within ABZR87_RS16640 at 84.191 kb on + strand, within ABZR87_RS16640 at 84.191 kb on + strand, within ABZR87_RS16640 at 84.255 kb on + strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.256 kb on - strand, within ABZR87_RS16640 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.415 kb on + strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.416 kb on - strand, within ABZR87_RS16645 at 84.452 kb on + strand, within ABZR87_RS16645 at 84.453 kb on - strand, within ABZR87_RS16645 at 84.453 kb on - strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.484 kb on + strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.485 kb on - strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.538 kb on + strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.539 kb on - strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.553 kb on + strand, within ABZR87_RS16645 at 84.618 kb on + strand at 84.618 kb on + strand at 84.618 kb on + strand at 84.618 kb on + strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.619 kb on - strand at 84.718 kb on - strand at 84.718 kb on - strand at 84.837 kb on + strand at 84.837 kb on + strand at 84.838 kb on - strand, within ABZR87_RS16650 at 84.918 kb on + strand, within ABZR87_RS16650 at 84.918 kb on + strand, within ABZR87_RS16650 at 84.918 kb on + strand, within ABZR87_RS16650 at 84.918 kb on + strand, within ABZR87_RS16650 at 84.919 kb on - strand, within ABZR87_RS16650 at 84.919 kb on - strand, within ABZR87_RS16650 at 84.919 kb on - strand, within ABZR87_RS16650 at 84.959 kb on + strand, within ABZR87_RS16650 at 84.959 kb on + strand, within ABZR87_RS16650 at 84.960 kb on - strand, within ABZR87_RS16650 at 84.960 kb on - strand, within ABZR87_RS16650 at 85.174 kb on + strand, within ABZR87_RS16650 at 85.174 kb on + strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.308 kb on + strand, within ABZR87_RS16650 at 85.308 kb on + strand, within ABZR87_RS16650 at 85.309 kb on - strand, within ABZR87_RS16650 at 85.309 kb on - strand, within ABZR87_RS16650 at 85.684 kb on - strand, within ABZR87_RS16650 at 85.684 kb on - strand, within ABZR87_RS16650 at 85.818 kb on + strand at 85.818 kb on + strand at 85.818 kb on + strand at 85.819 kb on - strand at 85.819 kb on - strand at 85.943 kb on + strand at 85.944 kb on - strand at 85.944 kb on - strand at 85.944 kb on - strand at 85.977 kb on + strand at 85.978 kb on - strand at 85.978 kb on - strand at 85.978 kb on - strand at 86.010 kb on + strand at 86.010 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.172 kb on + strand, within ABZR87_RS16655 at 86.173 kb on - strand, within ABZR87_RS16655 at 86.194 kb on - strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.287 kb on - strand, within ABZR87_RS16655 at 86.287 kb on - strand, within ABZR87_RS16655 at 86.710 kb on - strand, within ABZR87_RS16655 at 86.710 kb on - strand, within ABZR87_RS16655 at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 83,726 - ABZR87_RS16635 0.90 -1.8 83,743 + -0.2 83,743 + +0.1 83,749 + +0.2 83,749 + -0.5 83,749 + -0.2 83,749 + +0.0 83,749 + -0.4 83,749 + +1.7 83,750 - -0.8 83,750 - -1.3 83,750 - +0.2 83,750 - -2.3 83,853 - +0.3 83,853 - -1.0 83,853 - -0.4 83,894 + -0.0 83,895 - +0.6 83,997 + +0.0 83,997 + +0.1 84,034 - +0.5 84,034 - +0.3 84,034 - -0.3 84,034 - +0.3 84,034 - +0.5 84,034 - +1.5 84,126 + ABZR87_RS16640 0.31 -1.8 84,126 + ABZR87_RS16640 0.31 -0.6 84,126 + ABZR87_RS16640 0.31 -0.4 84,126 + ABZR87_RS16640 0.31 -0.2 84,126 + ABZR87_RS16640 0.31 -0.0 84,126 + ABZR87_RS16640 0.31 -0.6 84,127 - ABZR87_RS16640 0.31 -0.1 84,127 - ABZR87_RS16640 0.31 +0.0 84,191 + ABZR87_RS16640 0.52 +1.4 84,191 + ABZR87_RS16640 0.52 -1.2 84,255 + ABZR87_RS16640 0.74 +0.8 84,256 - ABZR87_RS16640 0.74 +0.3 84,256 - ABZR87_RS16640 0.74 +0.1 84,256 - ABZR87_RS16640 0.74 +0.2 84,415 + ABZR87_RS16645 0.26 +1.1 84,415 + ABZR87_RS16645 0.26 -0.0 84,415 + ABZR87_RS16645 0.26 +0.6 84,415 + ABZR87_RS16645 0.26 +0.4 84,415 + ABZR87_RS16645 0.26 -0.0 84,415 + ABZR87_RS16645 0.26 +0.5 84,415 + ABZR87_RS16645 0.26 +0.2 84,415 + ABZR87_RS16645 0.26 -0.7 84,416 - ABZR87_RS16645 0.26 +0.2 84,416 - ABZR87_RS16645 0.26 +0.1 84,416 - ABZR87_RS16645 0.26 -0.2 84,416 - ABZR87_RS16645 0.26 +0.2 84,452 + ABZR87_RS16645 0.38 -1.2 84,453 - ABZR87_RS16645 0.39 +0.2 84,453 - ABZR87_RS16645 0.39 +0.0 84,484 + ABZR87_RS16645 0.49 +0.5 84,484 + ABZR87_RS16645 0.49 +0.6 84,484 + ABZR87_RS16645 0.49 -0.9 84,484 + ABZR87_RS16645 0.49 +0.5 84,485 - ABZR87_RS16645 0.49 -0.6 84,485 - ABZR87_RS16645 0.49 -0.4 84,485 - ABZR87_RS16645 0.49 +0.6 84,485 - ABZR87_RS16645 0.49 +0.2 84,485 - ABZR87_RS16645 0.49 -0.8 84,485 - ABZR87_RS16645 0.49 -1.0 84,485 - ABZR87_RS16645 0.49 -0.2 84,485 - ABZR87_RS16645 0.49 -0.2 84,485 - ABZR87_RS16645 0.49 +0.4 84,538 + ABZR87_RS16645 0.67 +0.5 84,538 + ABZR87_RS16645 0.67 -0.5 84,538 + ABZR87_RS16645 0.67 -0.3 84,539 - ABZR87_RS16645 0.67 -1.3 84,539 - ABZR87_RS16645 0.67 -0.5 84,539 - ABZR87_RS16645 0.67 +0.5 84,553 + ABZR87_RS16645 0.72 -0.0 84,553 + ABZR87_RS16645 0.72 -0.3 84,553 + ABZR87_RS16645 0.72 +0.7 84,553 + ABZR87_RS16645 0.72 +0.2 84,618 + +0.7 84,618 + -0.0 84,618 + +0.6 84,618 + +0.1 84,619 - -0.4 84,619 - +0.9 84,619 - +0.2 84,619 - -0.3 84,619 - +0.2 84,718 - +0.2 84,718 - +1.2 84,837 + +0.2 84,837 + -0.6 84,838 - ABZR87_RS16650 0.10 +0.4 84,918 + ABZR87_RS16650 0.17 +0.5 84,918 + ABZR87_RS16650 0.17 +0.4 84,918 + ABZR87_RS16650 0.17 +0.9 84,918 + ABZR87_RS16650 0.17 +0.4 84,919 - ABZR87_RS16650 0.17 +0.1 84,919 - ABZR87_RS16650 0.17 -0.2 84,919 - ABZR87_RS16650 0.17 +0.5 84,959 + ABZR87_RS16650 0.20 -0.2 84,959 + ABZR87_RS16650 0.20 +0.2 84,960 - ABZR87_RS16650 0.20 -0.6 84,960 - ABZR87_RS16650 0.20 +0.6 85,174 + ABZR87_RS16650 0.38 +0.8 85,174 + ABZR87_RS16650 0.38 -1.1 85,182 - ABZR87_RS16650 0.38 -0.4 85,182 - ABZR87_RS16650 0.38 -0.1 85,182 - ABZR87_RS16650 0.38 +0.1 85,187 + ABZR87_RS16650 0.39 +0.5 85,187 + ABZR87_RS16650 0.39 +1.1 85,187 + ABZR87_RS16650 0.39 +0.3 85,187 + ABZR87_RS16650 0.39 +0.8 85,187 + ABZR87_RS16650 0.39 -0.2 85,187 + ABZR87_RS16650 0.39 +0.2 85,187 + ABZR87_RS16650 0.39 +0.6 85,188 - ABZR87_RS16650 0.39 +0.2 85,188 - ABZR87_RS16650 0.39 +0.1 85,188 - ABZR87_RS16650 0.39 +0.5 85,188 - ABZR87_RS16650 0.39 +0.3 85,188 - ABZR87_RS16650 0.39 +1.6 85,188 - ABZR87_RS16650 0.39 +0.1 85,188 - ABZR87_RS16650 0.39 -1.6 85,188 - ABZR87_RS16650 0.39 -0.8 85,308 + ABZR87_RS16650 0.49 +0.2 85,308 + ABZR87_RS16650 0.49 +0.1 85,309 - ABZR87_RS16650 0.49 +0.6 85,309 - ABZR87_RS16650 0.49 +1.0 85,684 - ABZR87_RS16650 0.80 +0.2 85,684 - ABZR87_RS16650 0.80 -0.2 85,818 + +1.0 85,818 + +0.8 85,818 + -0.9 85,819 - -0.1 85,819 - +0.5 85,943 + +0.2 85,944 - -0.6 85,944 - +0.6 85,944 - -2.2 85,977 + -0.5 85,978 - -0.1 85,978 - -0.8 85,978 - +0.0 86,010 + -0.2 86,010 + +0.3 86,102 + +0.1 86,102 + -1.3 86,102 + -0.6 86,102 + -0.1 86,102 + +0.6 86,102 + -0.5 86,102 + -1.1 86,102 + -1.0 86,103 - -0.5 86,103 - -0.5 86,103 - -0.8 86,103 - -0.7 86,103 - -0.3 86,172 + ABZR87_RS16655 0.17 +0.7 86,173 - ABZR87_RS16655 0.17 -0.0 86,194 - ABZR87_RS16655 0.20 -0.9 86,286 + ABZR87_RS16655 0.31 +0.1 86,286 + ABZR87_RS16655 0.31 -0.6 86,286 + ABZR87_RS16655 0.31 -0.4 86,286 + ABZR87_RS16655 0.31 -1.0 86,287 - ABZR87_RS16655 0.31 -1.6 86,287 - ABZR87_RS16655 0.31 -0.2 86,710 - ABZR87_RS16655 0.81 -0.5 86,710 - ABZR87_RS16655 0.81 -0.7 86,829 + -0.5 86,829 + +0.4 86,829 + +0.7 86,829 + -1.5 86,829 + -0.1 86,829 + +1.9 86,830 - -0.6 86,830 - +0.5 86,830 - -0.7 86,830 - +0.3 86,830 - -0.2 86,830 - -0.7 86,830 - +0.7 86,830 - +0.0 86,830 - +0.1 86,830 - +0.0 86,830 - -0.1 86,830 - +0.4 86,842 - -0.7 86,842 - -1.0 86,842 - -0.3 86,842 - -0.6 86,842 - +1.2 86,842 - -0.6 86,850 - +0.3
Or see this region's nucleotide sequence