Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09155

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09150 and ABZR87_RS09155 are separated by 206 nucleotidesABZR87_RS09155 and ABZR87_RS09160 overlap by 1 nucleotides ABZR87_RS09150: ABZR87_RS09150 - pyridoxamine 5'-phosphate oxidase, at 1,936,257 to 1,936,895 _RS09150 ABZR87_RS09155: ABZR87_RS09155 - sugar dehydrogenase complex small subunit, at 1,937,102 to 1,937,587 _RS09155 ABZR87_RS09160: ABZR87_RS09160 - GMC family oxidoreductase, at 1,937,587 to 1,939,197 _RS09160 Position (kb) 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.131 kb on + strandat 1936.132 kb on - strandat 1936.132 kb on - strandat 1936.132 kb on - strandat 1936.136 kb on + strandat 1936.136 kb on + strandat 1936.136 kb on + strandat 1936.137 kb on - strandat 1936.170 kb on + strandat 1936.171 kb on - strandat 1936.171 kb on - strandat 1936.171 kb on - strandat 1936.235 kb on + strandat 1936.240 kb on + strandat 1936.240 kb on + strandat 1936.240 kb on + strandat 1936.240 kb on + strandat 1936.240 kb on + strandat 1936.240 kb on + strandat 1936.241 kb on - strandat 1936.241 kb on - strandat 1936.241 kb on - strandat 1936.241 kb on - strandat 1936.258 kb on + strandat 1936.865 kb on - strandat 1936.930 kb on + strandat 1936.931 kb on - strandat 1936.931 kb on - strandat 1936.931 kb on - strandat 1936.932 kb on + strandat 1936.932 kb on + strandat 1936.932 kb on + strandat 1936.932 kb on + strandat 1936.933 kb on - strandat 1936.933 kb on - strandat 1936.954 kb on - strandat 1937.028 kb on + strandat 1937.028 kb on + strandat 1937.028 kb on + strandat 1937.028 kb on + strandat 1937.029 kb on - strandat 1937.030 kb on + strandat 1937.030 kb on + strandat 1937.030 kb on + strandat 1937.038 kb on - strandat 1937.444 kb on + strand, within ABZR87_RS09155at 1937.444 kb on + strand, within ABZR87_RS09155at 1937.473 kb on + strand, within ABZR87_RS09155at 1937.473 kb on + strand, within ABZR87_RS09155at 1937.473 kb on + strand, within ABZR87_RS09155at 1937.473 kb on + strand, within ABZR87_RS09155at 1937.474 kb on - strand, within ABZR87_RS09155at 1937.474 kb on - strand, within ABZR87_RS09155at 1937.474 kb on - strand, within ABZR87_RS09155at 1937.474 kb on - strand, within ABZR87_RS09155at 1937.477 kb on + strand, within ABZR87_RS09155at 1937.495 kb on + strand, within ABZR87_RS09155at 1937.495 kb on + strand, within ABZR87_RS09155at 1937.495 kb on + strand, within ABZR87_RS09155at 1937.495 kb on + strand, within ABZR87_RS09155at 1937.495 kb on + strand, within ABZR87_RS09155at 1937.496 kb on - strand, within ABZR87_RS09155at 1937.496 kb on - strand, within ABZR87_RS09155at 1937.496 kb on - strand, within ABZR87_RS09155at 1937.531 kb on + strand, within ABZR87_RS09155at 1937.531 kb on + strand, within ABZR87_RS09155at 1937.531 kb on + strand, within ABZR87_RS09155at 1937.531 kb on + strand, within ABZR87_RS09155at 1937.532 kb on - strand, within ABZR87_RS09155at 1937.532 kb on - strand, within ABZR87_RS09155at 1937.532 kb on - strand, within ABZR87_RS09155at 1937.532 kb on - strand, within ABZR87_RS09155at 1937.532 kb on - strand, within ABZR87_RS09155at 1937.774 kb on - strand, within ABZR87_RS09160at 1937.806 kb on + strand, within ABZR87_RS09160at 1937.806 kb on + strand, within ABZR87_RS09160at 1937.807 kb on - strand, within ABZR87_RS09160at 1937.824 kb on + strand, within ABZR87_RS09160at 1937.824 kb on + strand, within ABZR87_RS09160at 1937.824 kb on + strand, within ABZR87_RS09160at 1937.824 kb on + strand, within ABZR87_RS09160at 1937.824 kb on + strand, within ABZR87_RS09160at 1937.825 kb on - strand, within ABZR87_RS09160at 1937.825 kb on - strand, within ABZR87_RS09160at 1937.825 kb on - strand, within ABZR87_RS09160at 1937.863 kb on + strand, within ABZR87_RS09160at 1937.863 kb on + strand, within ABZR87_RS09160at 1937.864 kb on - strand, within ABZR87_RS09160at 1937.864 kb on - strand, within ABZR87_RS09160at 1937.864 kb on - strand, within ABZR87_RS09160at 1937.864 kb on - strand, within ABZR87_RS09160at 1937.864 kb on - strand, within ABZR87_RS09160at 1937.876 kb on + strand, within ABZR87_RS09160at 1937.950 kb on + strand, within ABZR87_RS09160at 1937.981 kb on - strand, within ABZR87_RS09160at 1937.998 kb on + strand, within ABZR87_RS09160at 1937.998 kb on + strand, within ABZR87_RS09160at 1937.999 kb on - strand, within ABZR87_RS09160at 1937.999 kb on - strand, within ABZR87_RS09160at 1938.002 kb on - strand, within ABZR87_RS09160at 1938.002 kb on - strand, within ABZR87_RS09160at 1938.029 kb on + strand, within ABZR87_RS09160at 1938.077 kb on - strand, within ABZR87_RS09160at 1938.077 kb on - strand, within ABZR87_RS09160at 1938.193 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.560 kb on - strand, within ABZR87_RS09160

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,936,131 + -2.5
1,936,132 - -0.9
1,936,132 - -0.7
1,936,132 - -2.2
1,936,136 + +0.1
1,936,136 + -0.2
1,936,136 + -1.0
1,936,137 - +0.8
1,936,170 + -0.8
1,936,171 - -2.5
1,936,171 - -0.3
1,936,171 - -0.5
1,936,235 + -0.4
1,936,240 + -0.2
1,936,240 + -0.5
1,936,240 + +0.1
1,936,240 + -0.4
1,936,240 + -0.2
1,936,240 + -0.8
1,936,241 - -0.7
1,936,241 - -1.6
1,936,241 - -0.2
1,936,241 - +0.9
1,936,258 + -0.2
1,936,865 - -1.8
1,936,930 + -0.2
1,936,931 - -0.4
1,936,931 - -1.2
1,936,931 - -1.3
1,936,932 + -0.1
1,936,932 + -0.1
1,936,932 + -1.6
1,936,932 + +0.3
1,936,933 - +1.0
1,936,933 - -0.4
1,936,954 - -0.2
1,937,028 + -0.1
1,937,028 + +1.0
1,937,028 + -0.4
1,937,028 + -0.1
1,937,029 - -1.0
1,937,030 + -0.3
1,937,030 + +0.2
1,937,030 + +0.4
1,937,038 - -0.0
1,937,444 + ABZR87_RS09155 0.70 +0.1
1,937,444 + ABZR87_RS09155 0.70 -0.2
1,937,473 + ABZR87_RS09155 0.76 +0.8
1,937,473 + ABZR87_RS09155 0.76 +0.1
1,937,473 + ABZR87_RS09155 0.76 +0.1
1,937,473 + ABZR87_RS09155 0.76 -0.5
1,937,474 - ABZR87_RS09155 0.77 -0.4
1,937,474 - ABZR87_RS09155 0.77 -0.1
1,937,474 - ABZR87_RS09155 0.77 -0.2
1,937,474 - ABZR87_RS09155 0.77 -0.3
1,937,477 + ABZR87_RS09155 0.77 -0.2
1,937,495 + ABZR87_RS09155 0.81 -0.9
1,937,495 + ABZR87_RS09155 0.81 -0.3
1,937,495 + ABZR87_RS09155 0.81 -0.8
1,937,495 + ABZR87_RS09155 0.81 +0.7
1,937,495 + ABZR87_RS09155 0.81 -0.0
1,937,496 - ABZR87_RS09155 0.81 -0.3
1,937,496 - ABZR87_RS09155 0.81 -0.9
1,937,496 - ABZR87_RS09155 0.81 -0.4
1,937,531 + ABZR87_RS09155 0.88 -1.0
1,937,531 + ABZR87_RS09155 0.88 -0.7
1,937,531 + ABZR87_RS09155 0.88 +0.2
1,937,531 + ABZR87_RS09155 0.88 -0.6
1,937,532 - ABZR87_RS09155 0.88 -0.1
1,937,532 - ABZR87_RS09155 0.88 +0.4
1,937,532 - ABZR87_RS09155 0.88 -1.6
1,937,532 - ABZR87_RS09155 0.88 -0.1
1,937,532 - ABZR87_RS09155 0.88 +0.6
1,937,774 - ABZR87_RS09160 0.12 -0.4
1,937,806 + ABZR87_RS09160 0.14 -0.5
1,937,806 + ABZR87_RS09160 0.14 -0.7
1,937,807 - ABZR87_RS09160 0.14 +0.6
1,937,824 + ABZR87_RS09160 0.15 -0.4
1,937,824 + ABZR87_RS09160 0.15 +0.5
1,937,824 + ABZR87_RS09160 0.15 +0.2
1,937,824 + ABZR87_RS09160 0.15 +0.2
1,937,824 + ABZR87_RS09160 0.15 +1.1
1,937,825 - ABZR87_RS09160 0.15 +0.9
1,937,825 - ABZR87_RS09160 0.15 +0.4
1,937,825 - ABZR87_RS09160 0.15 +0.5
1,937,863 + ABZR87_RS09160 0.17 -0.3
1,937,863 + ABZR87_RS09160 0.17 -0.4
1,937,864 - ABZR87_RS09160 0.17 +0.2
1,937,864 - ABZR87_RS09160 0.17 +0.0
1,937,864 - ABZR87_RS09160 0.17 -0.4
1,937,864 - ABZR87_RS09160 0.17 -0.3
1,937,864 - ABZR87_RS09160 0.17 -0.1
1,937,876 + ABZR87_RS09160 0.18 +0.8
1,937,950 + ABZR87_RS09160 0.23 -0.5
1,937,981 - ABZR87_RS09160 0.24 -0.4
1,937,998 + ABZR87_RS09160 0.26 -0.0
1,937,998 + ABZR87_RS09160 0.26 -0.1
1,937,999 - ABZR87_RS09160 0.26 -0.5
1,937,999 - ABZR87_RS09160 0.26 +1.2
1,938,002 - ABZR87_RS09160 0.26 -1.2
1,938,002 - ABZR87_RS09160 0.26 -1.2
1,938,029 + ABZR87_RS09160 0.27 -0.4
1,938,077 - ABZR87_RS09160 0.30 +0.5
1,938,077 - ABZR87_RS09160 0.30 +0.7
1,938,193 + ABZR87_RS09160 0.38 +1.1
1,938,259 + ABZR87_RS09160 0.42 -0.5
1,938,259 + ABZR87_RS09160 0.42 +1.2
1,938,259 + ABZR87_RS09160 0.42 -0.2
1,938,259 + ABZR87_RS09160 0.42 -0.2
1,938,259 + ABZR87_RS09160 0.42 -0.5
1,938,259 + ABZR87_RS09160 0.42 -0.1
1,938,259 + ABZR87_RS09160 0.42 -0.3
1,938,260 - ABZR87_RS09160 0.42 -0.6
1,938,260 - ABZR87_RS09160 0.42 +0.3
1,938,260 - ABZR87_RS09160 0.42 -0.1
1,938,260 - ABZR87_RS09160 0.42 +0.4
1,938,260 - ABZR87_RS09160 0.42 +2.4
1,938,559 + ABZR87_RS09160 0.60 -1.8
1,938,559 + ABZR87_RS09160 0.60 +0.2
1,938,559 + ABZR87_RS09160 0.60 -0.8
1,938,559 + ABZR87_RS09160 0.60 -0.2
1,938,560 - ABZR87_RS09160 0.60 +0.4

Or see this region's nucleotide sequence