Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07630 and ABZR87_RS07635 are separated by 79 nucleotides ABZR87_RS07635 and ABZR87_RS07640 are separated by 83 nucleotides
ABZR87_RS07630: ABZR87_RS07630 - glycerophosphodiester phosphodiesterase, at 1,616,296 to 1,617,438
_RS07630
ABZR87_RS07635: ABZR87_RS07635 - crossover junction endodeoxyribonuclease RuvC, at 1,617,518 to 1,618,063
_RS07635
ABZR87_RS07640: ABZR87_RS07640 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,618,147 to 1,619,721
_RS07640
Position (kb)
1617
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1616.594 kb on + strand, within ABZR87_RS07630 at 1616.708 kb on - strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.867 kb on - strand, within ABZR87_RS07630 at 1616.870 kb on + strand, within ABZR87_RS07630 at 1616.871 kb on - strand, within ABZR87_RS07630 at 1616.895 kb on - strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.206 kb on - strand, within ABZR87_RS07630 at 1617.206 kb on - strand, within ABZR87_RS07630 at 1617.251 kb on + strand, within ABZR87_RS07630 at 1617.322 kb on - strand, within ABZR87_RS07630 at 1617.362 kb on + strand at 1617.459 kb on + strand at 1617.459 kb on + strand at 1617.460 kb on - strand at 1617.471 kb on + strand at 1617.471 kb on + strand at 1617.507 kb on + strand at 1617.508 kb on - strand at 1617.562 kb on + strand at 1617.563 kb on - strand at 1617.889 kb on - strand, within ABZR87_RS07635 at 1617.918 kb on + strand, within ABZR87_RS07635 at 1617.919 kb on - strand, within ABZR87_RS07635 at 1617.919 kb on - strand, within ABZR87_RS07635 at 1617.920 kb on + strand, within ABZR87_RS07635 at 1617.920 kb on + strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.985 kb on - strand, within ABZR87_RS07635 at 1618.108 kb on + strand at 1618.108 kb on + strand at 1618.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 1,616,594 + ABZR87_RS07630 0.26 -0.1 1,616,708 - ABZR87_RS07630 0.36 -1.7 1,616,783 + ABZR87_RS07630 0.43 -0.5 1,616,783 + ABZR87_RS07630 0.43 +0.6 1,616,783 + ABZR87_RS07630 0.43 +0.1 1,616,784 - ABZR87_RS07630 0.43 -0.3 1,616,784 - ABZR87_RS07630 0.43 +2.9 1,616,784 - ABZR87_RS07630 0.43 -0.1 1,616,784 - ABZR87_RS07630 0.43 +0.4 1,616,867 - ABZR87_RS07630 0.50 +0.7 1,616,870 + ABZR87_RS07630 0.50 +0.4 1,616,871 - ABZR87_RS07630 0.50 -0.4 1,616,895 - ABZR87_RS07630 0.52 -0.7 1,617,205 + ABZR87_RS07630 0.80 +0.4 1,617,205 + ABZR87_RS07630 0.80 +0.4 1,617,205 + ABZR87_RS07630 0.80 +0.8 1,617,206 - ABZR87_RS07630 0.80 -0.4 1,617,206 - ABZR87_RS07630 0.80 +0.7 1,617,251 + ABZR87_RS07630 0.84 +0.5 1,617,322 - ABZR87_RS07630 0.90 -0.3 1,617,362 + -0.4 1,617,459 + +1.1 1,617,459 + -0.4 1,617,460 - +0.1 1,617,471 + -0.3 1,617,471 + -0.2 1,617,507 + -0.1 1,617,508 - -0.3 1,617,562 + -0.2 1,617,563 - -2.1 1,617,889 - ABZR87_RS07635 0.68 -0.4 1,617,918 + ABZR87_RS07635 0.73 -0.2 1,617,919 - ABZR87_RS07635 0.73 -0.9 1,617,919 - ABZR87_RS07635 0.73 -0.1 1,617,920 + ABZR87_RS07635 0.74 +0.0 1,617,920 + ABZR87_RS07635 0.74 +0.6 1,617,921 - ABZR87_RS07635 0.74 -1.4 1,617,921 - ABZR87_RS07635 0.74 -0.2 1,617,921 - ABZR87_RS07635 0.74 -1.7 1,617,985 - ABZR87_RS07635 0.86 -0.4 1,618,108 + -0.9 1,618,108 + +0.1 1,618,149 - +0.7
Or see this region's nucleotide sequence