Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06775

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06770 and ABZR87_RS06775 are separated by 29 nucleotidesABZR87_RS06775 and ABZR87_RS06780 are separated by 111 nucleotidesABZR87_RS06780 and ABZR87_RS06785 are separated by 108 nucleotides ABZR87_RS06770: ABZR87_RS06770 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,437,003 to 1,438,019 _RS06770 ABZR87_RS06775: ABZR87_RS06775 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 1,438,049 to 1,438,519 _RS06775 ABZR87_RS06780: ABZR87_RS06780 - ComF family protein, at 1,438,631 to 1,439,353 _RS06780 ABZR87_RS06785: ABZR87_RS06785 - methyltransferase domain-containing protein, at 1,439,462 to 1,440,403 _RS06785 Position (kb) 1438 1439Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1437.141 kb on + strand, within ABZR87_RS06770at 1437.141 kb on + strand, within ABZR87_RS06770at 1437.142 kb on - strand, within ABZR87_RS06770at 1437.316 kb on + strand, within ABZR87_RS06770at 1437.316 kb on + strand, within ABZR87_RS06770at 1437.317 kb on - strand, within ABZR87_RS06770at 1437.317 kb on - strand, within ABZR87_RS06770at 1437.482 kb on + strand, within ABZR87_RS06770at 1437.482 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.541 kb on - strand, within ABZR87_RS06770at 1437.911 kb on + strand, within ABZR87_RS06770at 1437.912 kb on - strand, within ABZR87_RS06770at 1437.912 kb on - strand, within ABZR87_RS06770at 1437.920 kb on + strandat 1437.920 kb on + strandat 1437.920 kb on + strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.926 kb on + strandat 1437.927 kb on - strandat 1438.018 kb on - strandat 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.116 kb on - strand, within ABZR87_RS06775at 1438.116 kb on - strand, within ABZR87_RS06775at 1438.360 kb on - strand, within ABZR87_RS06775at 1438.368 kb on + strand, within ABZR87_RS06775at 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.555 kb on - strandat 1438.555 kb on - strandat 1438.843 kb on + strand, within ABZR87_RS06780at 1438.844 kb on - strand, within ABZR87_RS06780at 1438.844 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780at 1439.100 kb on + strand, within ABZR87_RS06780at 1439.100 kb on + strand, within ABZR87_RS06780at 1439.101 kb on - strand, within ABZR87_RS06780at 1439.101 kb on - strand, within ABZR87_RS06780at 1439.367 kb on - strandat 1439.425 kb on - strandat 1439.426 kb on + strandat 1439.426 kb on + strandat 1439.426 kb on + strandat 1439.426 kb on + strandat 1439.426 kb on + strandat 1439.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,437,141 + ABZR87_RS06770 0.14 -3.3
1,437,141 + ABZR87_RS06770 0.14 -3.5
1,437,142 - ABZR87_RS06770 0.14 -2.9
1,437,316 + ABZR87_RS06770 0.31 -3.3
1,437,316 + ABZR87_RS06770 0.31 -3.2
1,437,317 - ABZR87_RS06770 0.31 -1.7
1,437,317 - ABZR87_RS06770 0.31 -4.1
1,437,482 + ABZR87_RS06770 0.47 -4.3
1,437,482 + ABZR87_RS06770 0.47 -2.2
1,437,540 + ABZR87_RS06770 0.53 -4.9
1,437,540 + ABZR87_RS06770 0.53 -2.9
1,437,540 + ABZR87_RS06770 0.53 -4.2
1,437,541 - ABZR87_RS06770 0.53 -4.1
1,437,911 + ABZR87_RS06770 0.89 -2.2
1,437,912 - ABZR87_RS06770 0.89 -3.8
1,437,912 - ABZR87_RS06770 0.89 -2.6
1,437,920 + -3.3
1,437,920 + -3.6
1,437,920 + -4.6
1,437,921 - -2.5
1,437,921 - -2.5
1,437,921 - -2.3
1,437,921 - -0.6
1,437,921 - -4.3
1,437,926 + -3.4
1,437,927 - -3.8
1,438,018 - +0.6
1,438,115 + ABZR87_RS06775 0.14 +0.2
1,438,115 + ABZR87_RS06775 0.14 +0.4
1,438,115 + ABZR87_RS06775 0.14 +0.8
1,438,115 + ABZR87_RS06775 0.14 -0.2
1,438,115 + ABZR87_RS06775 0.14 -0.5
1,438,115 + ABZR87_RS06775 0.14 +1.3
1,438,116 - ABZR87_RS06775 0.14 -0.6
1,438,116 - ABZR87_RS06775 0.14 +0.1
1,438,360 - ABZR87_RS06775 0.66 +0.6
1,438,368 + ABZR87_RS06775 0.68 +0.2
1,438,554 + -0.3
1,438,554 + -1.3
1,438,554 + +0.9
1,438,554 + -1.7
1,438,555 - +0.9
1,438,555 - +1.1
1,438,843 + ABZR87_RS06780 0.29 +0.4
1,438,844 - ABZR87_RS06780 0.29 +0.5
1,438,844 - ABZR87_RS06780 0.29 -0.1
1,438,930 - ABZR87_RS06780 0.41 -0.6
1,438,930 - ABZR87_RS06780 0.41 +1.0
1,438,930 - ABZR87_RS06780 0.41 -0.0
1,439,100 + ABZR87_RS06780 0.65 +0.6
1,439,100 + ABZR87_RS06780 0.65 +0.4
1,439,101 - ABZR87_RS06780 0.65 -1.0
1,439,101 - ABZR87_RS06780 0.65 +0.3
1,439,367 - -0.3
1,439,425 - -0.1
1,439,426 + +0.2
1,439,426 + -0.3
1,439,426 + -0.4
1,439,426 + +0.3
1,439,426 + -0.8
1,439,426 + +1.1

Or see this region's nucleotide sequence