Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04205 and ABZR87_RS04210 are separated by 75 nucleotides ABZR87_RS04210 and ABZR87_RS04215 are separated by 94 nucleotides ABZR87_RS04215 and ABZR87_RS04220 are separated by 245 nucleotides
ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615
_RS04205
ABZR87_RS04210: ABZR87_RS04210 - ABC transporter ATP-binding protein, at 879,691 to 880,431
_RS04210
ABZR87_RS04215: ABZR87_RS04215 - ABC transporter ATP-binding protein, at 880,526 to 881,296
_RS04215
ABZR87_RS04220: ABZR87_RS04220 - choline dehydrogenase, at 881,542 to 883,176
_RS04220
Position (kb) 880
881
882 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 879.578 kb on - strand at 879.692 kb on + strand at 879.692 kb on + strand at 879.782 kb on + strand, within ABZR87_RS04210 at 879.782 kb on + strand, within ABZR87_RS04210 at 879.840 kb on + strand, within ABZR87_RS04210 at 879.841 kb on - strand, within ABZR87_RS04210 at 879.841 kb on - strand, within ABZR87_RS04210 at 879.855 kb on + strand, within ABZR87_RS04210 at 879.855 kb on + strand, within ABZR87_RS04210 at 879.855 kb on + strand, within ABZR87_RS04210 at 879.855 kb on + strand, within ABZR87_RS04210 at 879.855 kb on + strand, within ABZR87_RS04210 at 879.856 kb on - strand, within ABZR87_RS04210 at 879.856 kb on - strand, within ABZR87_RS04210 at 879.856 kb on - strand, within ABZR87_RS04210 at 880.043 kb on + strand, within ABZR87_RS04210 at 880.043 kb on + strand, within ABZR87_RS04210 at 880.467 kb on + strand at 880.467 kb on + strand at 880.467 kb on + strand at 880.477 kb on - strand at 880.477 kb on - strand at 880.477 kb on - strand at 880.561 kb on + strand at 880.562 kb on - strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.603 kb on - strand, within ABZR87_RS04215 at 880.842 kb on + strand, within ABZR87_RS04215 at 880.956 kb on + strand, within ABZR87_RS04215 at 880.956 kb on + strand, within ABZR87_RS04215 at 880.957 kb on - strand, within ABZR87_RS04215 at 881.240 kb on - strand at 881.323 kb on + strand at 881.323 kb on + strand at 881.324 kb on - strand at 881.387 kb on + strand at 881.387 kb on + strand at 881.388 kb on - strand at 881.388 kb on - strand at 881.398 kb on + strand at 881.450 kb on + strand at 881.451 kb on - strand at 881.455 kb on - strand at 881.460 kb on + strand at 881.461 kb on - strand at 881.461 kb on - strand at 881.465 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.493 kb on - strand at 881.637 kb on + strand at 881.637 kb on + strand at 881.638 kb on - strand at 881.638 kb on - strand at 881.649 kb on + strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.846 kb on + strand, within ABZR87_RS04220 at 881.847 kb on - strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.862 kb on - strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 882.104 kb on + strand, within ABZR87_RS04220 at 882.105 kb on - strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.201 kb on - strand, within ABZR87_RS04220
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 879,578 - +0.1 879,692 + -1.4 879,692 + -0.3 879,782 + ABZR87_RS04210 0.12 -1.9 879,782 + ABZR87_RS04210 0.12 -1.2 879,840 + ABZR87_RS04210 0.20 -1.2 879,841 - ABZR87_RS04210 0.20 -0.3 879,841 - ABZR87_RS04210 0.20 -1.0 879,855 + ABZR87_RS04210 0.22 -1.9 879,855 + ABZR87_RS04210 0.22 -0.8 879,855 + ABZR87_RS04210 0.22 -1.7 879,855 + ABZR87_RS04210 0.22 -0.5 879,855 + ABZR87_RS04210 0.22 -1.3 879,856 - ABZR87_RS04210 0.22 -0.4 879,856 - ABZR87_RS04210 0.22 -0.1 879,856 - ABZR87_RS04210 0.22 -1.6 880,043 + ABZR87_RS04210 0.48 -0.8 880,043 + ABZR87_RS04210 0.48 -0.9 880,467 + -0.8 880,467 + -0.1 880,467 + +0.8 880,477 - -0.6 880,477 - -0.5 880,477 - -0.2 880,561 + -0.2 880,562 - -0.9 880,563 + -0.3 880,563 + +1.2 880,563 + -0.1 880,563 + -0.7 880,563 + -0.9 880,563 + -0.3 880,563 + -0.4 880,563 + +0.3 880,564 - +0.1 880,564 - -0.3 880,564 - -1.1 880,564 - -4.0 880,564 - -0.3 880,564 - -1.5 880,564 - -0.5 880,564 - -2.5 880,603 - ABZR87_RS04215 0.10 -1.5 880,842 + ABZR87_RS04215 0.41 -1.9 880,956 + ABZR87_RS04215 0.56 -0.7 880,956 + ABZR87_RS04215 0.56 +0.2 880,957 - ABZR87_RS04215 0.56 -1.7 881,240 - -0.3 881,323 + -0.4 881,323 + -0.2 881,324 - +0.0 881,387 + +0.2 881,387 + +0.2 881,388 - -0.3 881,388 - +1.8 881,398 + +0.0 881,450 + -0.2 881,451 - +0.8 881,455 - +0.7 881,460 + -0.4 881,461 - +2.3 881,461 - +0.5 881,465 - +0.2 881,487 - +0.0 881,487 - +0.7 881,487 - -0.2 881,487 - +0.8 881,487 - +0.0 881,487 - +0.2 881,487 - +0.4 881,493 - -0.1 881,637 + +0.1 881,637 + -0.9 881,638 - +1.4 881,638 - -0.5 881,649 + -0.9 881,650 - +0.5 881,650 - +0.8 881,650 - +0.7 881,650 - -0.6 881,846 + ABZR87_RS04220 0.19 +0.1 881,847 - ABZR87_RS04220 0.19 +0.4 881,861 + ABZR87_RS04220 0.20 +0.7 881,861 + ABZR87_RS04220 0.20 -0.2 881,861 + ABZR87_RS04220 0.20 -0.1 881,861 + ABZR87_RS04220 0.20 -0.3 881,861 + ABZR87_RS04220 0.20 +1.2 881,861 + ABZR87_RS04220 0.20 +0.2 881,861 + ABZR87_RS04220 0.20 -0.2 881,861 + ABZR87_RS04220 0.20 -0.2 881,862 - ABZR87_RS04220 0.20 +0.4 881,948 + ABZR87_RS04220 0.25 -2.3 881,948 + ABZR87_RS04220 0.25 +0.4 881,948 + ABZR87_RS04220 0.25 +0.3 881,948 + ABZR87_RS04220 0.25 -0.9 881,948 + ABZR87_RS04220 0.25 -0.3 881,948 + ABZR87_RS04220 0.25 -0.3 882,104 + ABZR87_RS04220 0.34 -0.2 882,105 - ABZR87_RS04220 0.34 -0.2 882,200 + ABZR87_RS04220 0.40 +0.5 882,200 + ABZR87_RS04220 0.40 -1.9 882,200 + ABZR87_RS04220 0.40 +0.7 882,201 - ABZR87_RS04220 0.40 +1.2
Or see this region's nucleotide sequence