Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04210

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04205 and ABZR87_RS04210 are separated by 75 nucleotidesABZR87_RS04210 and ABZR87_RS04215 are separated by 94 nucleotides ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615 _RS04205 ABZR87_RS04210: ABZR87_RS04210 - ABC transporter ATP-binding protein, at 879,691 to 880,431 _RS04210 ABZR87_RS04215: ABZR87_RS04215 - ABC transporter ATP-binding protein, at 880,526 to 881,296 _RS04215 Position (kb) 879 880 881Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 878.735 kb on + strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.916 kb on + strand, within ABZR87_RS04205at 878.978 kb on + strand, within ABZR87_RS04205at 878.979 kb on - strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.488 kb on + strand, within ABZR87_RS04205at 879.488 kb on + strand, within ABZR87_RS04205at 879.490 kb on - strand, within ABZR87_RS04205at 879.512 kb on + strandat 879.512 kb on + strandat 879.512 kb on + strandat 879.513 kb on - strandat 879.513 kb on - strandat 879.578 kb on - strandat 879.692 kb on + strandat 879.692 kb on + strandat 879.782 kb on + strand, within ABZR87_RS04210at 879.782 kb on + strand, within ABZR87_RS04210at 879.840 kb on + strand, within ABZR87_RS04210at 879.841 kb on - strand, within ABZR87_RS04210at 879.841 kb on - strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 880.043 kb on + strand, within ABZR87_RS04210at 880.043 kb on + strand, within ABZR87_RS04210at 880.467 kb on + strandat 880.467 kb on + strandat 880.467 kb on + strandat 880.477 kb on - strandat 880.477 kb on - strandat 880.477 kb on - strandat 880.561 kb on + strandat 880.562 kb on - strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.603 kb on - strand, within ABZR87_RS04215at 880.842 kb on + strand, within ABZR87_RS04215at 880.956 kb on + strand, within ABZR87_RS04215at 880.956 kb on + strand, within ABZR87_RS04215at 880.957 kb on - strand, within ABZR87_RS04215at 881.240 kb on - strandat 881.323 kb on + strandat 881.323 kb on + strandat 881.324 kb on - strandat 881.387 kb on + strandat 881.387 kb on + strandat 881.388 kb on - strandat 881.388 kb on - strandat 881.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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878,735 + ABZR87_RS04205 0.27 +0.6
878,736 - ABZR87_RS04205 0.27 -0.5
878,736 - ABZR87_RS04205 0.27 -2.2
878,778 - ABZR87_RS04205 0.31 +0.4
878,778 - ABZR87_RS04205 0.31 -1.3
878,826 + ABZR87_RS04205 0.35 -0.4
878,826 + ABZR87_RS04205 0.35 -0.3
878,826 + ABZR87_RS04205 0.35 +0.3
878,826 + ABZR87_RS04205 0.35 -0.8
878,826 + ABZR87_RS04205 0.35 +0.0
878,826 + ABZR87_RS04205 0.35 -0.3
878,826 + ABZR87_RS04205 0.35 -0.3
878,826 + ABZR87_RS04205 0.35 -0.5
878,827 - ABZR87_RS04205 0.35 +0.0
878,827 - ABZR87_RS04205 0.35 +0.5
878,827 - ABZR87_RS04205 0.35 +0.5
878,916 + ABZR87_RS04205 0.42 -0.1
878,978 + ABZR87_RS04205 0.47 -0.6
878,979 - ABZR87_RS04205 0.47 -1.2
879,173 + ABZR87_RS04205 0.63 -0.3
879,173 + ABZR87_RS04205 0.63 -0.3
879,174 - ABZR87_RS04205 0.63 +0.7
879,174 - ABZR87_RS04205 0.63 +0.3
879,174 - ABZR87_RS04205 0.63 -0.6
879,174 - ABZR87_RS04205 0.63 +0.6
879,174 - ABZR87_RS04205 0.63 -0.3
879,174 - ABZR87_RS04205 0.63 -2.4
879,174 - ABZR87_RS04205 0.63 +0.2
879,179 + ABZR87_RS04205 0.64 -0.8
879,179 + ABZR87_RS04205 0.64 -1.7
879,180 - ABZR87_RS04205 0.64 -0.5
879,180 - ABZR87_RS04205 0.64 -0.1
879,180 - ABZR87_RS04205 0.64 -0.6
879,180 - ABZR87_RS04205 0.64 -0.6
879,488 + ABZR87_RS04205 0.89 -1.2
879,488 + ABZR87_RS04205 0.89 -0.3
879,490 - ABZR87_RS04205 0.90 +0.3
879,512 + -0.5
879,512 + +0.1
879,512 + -0.6
879,513 - +0.3
879,513 - +0.1
879,578 - +0.1
879,692 + -1.4
879,692 + -0.3
879,782 + ABZR87_RS04210 0.12 -1.9
879,782 + ABZR87_RS04210 0.12 -1.2
879,840 + ABZR87_RS04210 0.20 -1.2
879,841 - ABZR87_RS04210 0.20 -0.3
879,841 - ABZR87_RS04210 0.20 -1.0
879,855 + ABZR87_RS04210 0.22 -1.9
879,855 + ABZR87_RS04210 0.22 -0.8
879,855 + ABZR87_RS04210 0.22 -1.7
879,855 + ABZR87_RS04210 0.22 -0.5
879,855 + ABZR87_RS04210 0.22 -1.3
879,856 - ABZR87_RS04210 0.22 -0.4
879,856 - ABZR87_RS04210 0.22 -0.1
879,856 - ABZR87_RS04210 0.22 -1.6
880,043 + ABZR87_RS04210 0.48 -0.8
880,043 + ABZR87_RS04210 0.48 -0.9
880,467 + -0.8
880,467 + -0.1
880,467 + +0.8
880,477 - -0.6
880,477 - -0.5
880,477 - -0.2
880,561 + -0.2
880,562 - -0.9
880,563 + -0.3
880,563 + +1.2
880,563 + -0.1
880,563 + -0.7
880,563 + -0.9
880,563 + -0.3
880,563 + -0.4
880,563 + +0.3
880,564 - +0.1
880,564 - -0.3
880,564 - -1.1
880,564 - -4.0
880,564 - -0.3
880,564 - -1.5
880,564 - -0.5
880,564 - -2.5
880,603 - ABZR87_RS04215 0.10 -1.5
880,842 + ABZR87_RS04215 0.41 -1.9
880,956 + ABZR87_RS04215 0.56 -0.7
880,956 + ABZR87_RS04215 0.56 +0.2
880,957 - ABZR87_RS04215 0.56 -1.7
881,240 - -0.3
881,323 + -0.4
881,323 + -0.2
881,324 - +0.0
881,387 + +0.2
881,387 + +0.2
881,388 - -0.3
881,388 - +1.8
881,398 + +0.0

Or see this region's nucleotide sequence