Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03780

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03765 and ABZR87_RS03770 are separated by 40 nucleotidesABZR87_RS03770 and ABZR87_RS03775 are separated by 16 nucleotidesABZR87_RS03775 and ABZR87_RS03780 are separated by 18 nucleotidesABZR87_RS03780 and ABZR87_RS03785 are separated by 10 nucleotidesABZR87_RS03785 and ABZR87_RS03790 are separated by 171 nucleotides ABZR87_RS03765: ABZR87_RS03765 - sulfur oxidation c-type cytochrome SoxA, at 782,057 to 782,857 _RS03765 ABZR87_RS03770: ABZR87_RS03770 - DsrE family protein, at 782,898 to 783,353 _RS03770 ABZR87_RS03775: ABZR87_RS03775 - thiosulfate oxidation carrier complex protein SoxZ, at 783,370 to 783,681 _RS03775 ABZR87_RS03780: ABZR87_RS03780 - thiosulfate oxidation carrier protein SoxY, at 783,700 to 784,170 _RS03780 ABZR87_RS03785: ABZR87_RS03785 - c-type cytochrome, at 784,181 to 784,528 _RS03785 ABZR87_RS03790: ABZR87_RS03790 - EamA family transporter, at 784,700 to 785,587 _RS03790 Position (kb) 783 784 785Strain fitness (log2 ratio) -2 -1 0 1at 782.767 kb on - strand, within ABZR87_RS03765at 782.909 kb on + strandat 782.909 kb on + strandat 782.909 kb on + strandat 782.910 kb on - strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.912 kb on - strandat 782.912 kb on - strandat 782.912 kb on - strandat 783.235 kb on + strand, within ABZR87_RS03770at 783.235 kb on + strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.247 kb on + strand, within ABZR87_RS03770at 783.247 kb on + strand, within ABZR87_RS03770at 783.248 kb on - strand, within ABZR87_RS03770at 783.248 kb on - strand, within ABZR87_RS03770at 783.371 kb on + strandat 783.371 kb on + strandat 783.378 kb on + strandat 783.378 kb on + strandat 783.378 kb on + strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.780 kb on - strand, within ABZR87_RS03780at 783.780 kb on - strand, within ABZR87_RS03780at 784.341 kb on + strand, within ABZR87_RS03785at 784.341 kb on + strand, within ABZR87_RS03785at 784.341 kb on + strand, within ABZR87_RS03785at 784.341 kb on + strand, within ABZR87_RS03785at 784.342 kb on - strand, within ABZR87_RS03785at 784.363 kb on - strand, within ABZR87_RS03785at 784.363 kb on - strand, within ABZR87_RS03785at 784.594 kb on + strandat 784.595 kb on - strandat 784.595 kb on - strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.620 kb on + strandat 784.621 kb on - strandat 784.621 kb on - strandat 784.621 kb on - strandat 784.621 kb on - strandat 784.662 kb on - strandat 784.881 kb on + strand, within ABZR87_RS03790at 784.911 kb on + strand, within ABZR87_RS03790at 784.911 kb on + strand, within ABZR87_RS03790at 784.911 kb on + strand, within ABZR87_RS03790at 784.912 kb on - strand, within ABZR87_RS03790at 784.941 kb on + strand, within ABZR87_RS03790at 784.941 kb on + strand, within ABZR87_RS03790at 784.941 kb on + strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.942 kb on - strand, within ABZR87_RS03790at 784.984 kb on + strand, within ABZR87_RS03790at 784.985 kb on - strand, within ABZR87_RS03790at 785.016 kb on + strand, within ABZR87_RS03790at 785.016 kb on + strand, within ABZR87_RS03790at 785.016 kb on + strand, within ABZR87_RS03790at 785.017 kb on - strand, within ABZR87_RS03790at 785.017 kb on - strand, within ABZR87_RS03790at 785.017 kb on - strand, within ABZR87_RS03790

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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782,767 - ABZR87_RS03765 0.89 +0.1
782,909 + +0.6
782,909 + -0.2
782,909 + -0.0
782,910 - +0.4
782,911 + -1.0
782,911 + -0.4
782,911 + +0.8
782,911 + +0.4
782,912 - +0.4
782,912 - +0.2
782,912 - +0.5
783,235 + ABZR87_RS03770 0.74 -0.3
783,235 + ABZR87_RS03770 0.74 +0.9
783,236 - ABZR87_RS03770 0.74 +0.8
783,236 - ABZR87_RS03770 0.74 +0.7
783,236 - ABZR87_RS03770 0.74 +0.3
783,236 - ABZR87_RS03770 0.74 -0.2
783,236 - ABZR87_RS03770 0.74 -0.7
783,236 - ABZR87_RS03770 0.74 +0.5
783,247 + ABZR87_RS03770 0.77 -0.2
783,247 + ABZR87_RS03770 0.77 -0.0
783,248 - ABZR87_RS03770 0.77 -0.5
783,248 - ABZR87_RS03770 0.77 +0.0
783,371 + +0.3
783,371 + -2.0
783,378 + -0.2
783,378 + +0.5
783,378 + -0.6
783,379 - -0.0
783,379 - -0.4
783,379 - +0.4
783,379 - +0.6
783,379 - -1.1
783,379 - -0.0
783,780 - ABZR87_RS03780 0.17 -0.7
783,780 - ABZR87_RS03780 0.17 -1.2
784,341 + ABZR87_RS03785 0.46 -0.2
784,341 + ABZR87_RS03785 0.46 -0.8
784,341 + ABZR87_RS03785 0.46 +0.2
784,341 + ABZR87_RS03785 0.46 +1.5
784,342 - ABZR87_RS03785 0.46 +0.1
784,363 - ABZR87_RS03785 0.52 -0.4
784,363 - ABZR87_RS03785 0.52 -0.1
784,594 + +0.6
784,595 - +0.9
784,595 - -0.1
784,620 + -0.2
784,620 + -1.0
784,620 + +0.9
784,620 + -0.0
784,620 + +0.2
784,620 + +0.6
784,620 + +0.0
784,620 + +0.4
784,621 - -0.5
784,621 - -0.6
784,621 - +0.6
784,621 - +0.6
784,662 - +0.1
784,881 + ABZR87_RS03790 0.20 -0.0
784,911 + ABZR87_RS03790 0.24 +0.5
784,911 + ABZR87_RS03790 0.24 +0.4
784,911 + ABZR87_RS03790 0.24 -0.6
784,912 - ABZR87_RS03790 0.24 +0.1
784,941 + ABZR87_RS03790 0.27 +0.4
784,941 + ABZR87_RS03790 0.27 +0.5
784,941 + ABZR87_RS03790 0.27 -0.0
784,942 - ABZR87_RS03790 0.27 -1.1
784,942 - ABZR87_RS03790 0.27 +0.1
784,942 - ABZR87_RS03790 0.27 -0.6
784,942 - ABZR87_RS03790 0.27 +1.7
784,942 - ABZR87_RS03790 0.27 -0.5
784,942 - ABZR87_RS03790 0.27 -0.0
784,942 - ABZR87_RS03790 0.27 -0.3
784,942 - ABZR87_RS03790 0.27 -0.4
784,942 - ABZR87_RS03790 0.27 +0.3
784,984 + ABZR87_RS03790 0.32 +0.6
784,985 - ABZR87_RS03790 0.32 -0.1
785,016 + ABZR87_RS03790 0.36 -0.1
785,016 + ABZR87_RS03790 0.36 -0.8
785,016 + ABZR87_RS03790 0.36 -1.4
785,017 - ABZR87_RS03790 0.36 +0.1
785,017 - ABZR87_RS03790 0.36 -0.3
785,017 - ABZR87_RS03790 0.36 -0.2

Or see this region's nucleotide sequence