Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01665 and ABZR87_RS01670 are separated by 120 nucleotides ABZR87_RS01670 and ABZR87_RS01675 are separated by 92 nucleotides ABZR87_RS01675 and ABZR87_RS01680 are separated by 9 nucleotides ABZR87_RS01680 and ABZR87_RS01685 are separated by 251 nucleotides
ABZR87_RS01665: ABZR87_RS01665 - DUF3426 domain-containing protein, at 348,799 to 350,250
_RS01665
ABZR87_RS01670: ABZR87_RS01670 - thiol peroxidase, at 350,371 to 350,871
_RS01670
ABZR87_RS01675: ABZR87_RS01675 - carbohydrate kinase family protein, at 350,964 to 351,899
_RS01675
ABZR87_RS01680: ABZR87_RS01680 - membrane protein, at 351,909 to 352,376
_RS01680
ABZR87_RS01685: ABZR87_RS01685 - histone H1-like DNA-binding protein, at 352,628 to 353,203
_RS01685
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.999 kb on + strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.000 kb on - strand, within ABZR87_RS01665 at 350.122 kb on + strand at 350.123 kb on - strand at 350.123 kb on - strand at 350.123 kb on - strand at 350.123 kb on - strand at 350.146 kb on + strand at 350.146 kb on + strand at 350.146 kb on + strand at 350.146 kb on + strand at 350.146 kb on + strand at 350.147 kb on - strand at 350.147 kb on - strand at 350.147 kb on - strand at 350.147 kb on - strand at 350.180 kb on + strand at 350.181 kb on - strand at 350.266 kb on + strand at 350.267 kb on - strand at 350.364 kb on + strand at 350.364 kb on + strand at 350.365 kb on - strand at 350.365 kb on - strand at 350.595 kb on + strand, within ABZR87_RS01670 at 350.719 kb on + strand, within ABZR87_RS01670 at 350.803 kb on + strand, within ABZR87_RS01670 at 350.803 kb on + strand, within ABZR87_RS01670 at 350.804 kb on - strand, within ABZR87_RS01670 at 350.842 kb on + strand at 350.842 kb on + strand at 350.842 kb on + strand at 350.842 kb on + strand at 350.842 kb on + strand at 350.842 kb on + strand at 350.843 kb on - strand at 350.843 kb on - strand at 350.843 kb on - strand at 350.843 kb on - strand at 350.869 kb on + strand at 350.869 kb on + strand at 350.869 kb on + strand at 350.870 kb on - strand at 350.870 kb on - strand at 350.870 kb on - strand at 350.870 kb on - strand at 350.947 kb on - strand at 350.947 kb on - strand at 350.947 kb on - strand at 350.947 kb on - strand at 350.963 kb on + strand at 350.963 kb on + strand at 350.995 kb on - strand at 351.127 kb on - strand, within ABZR87_RS01675 at 351.192 kb on + strand, within ABZR87_RS01675 at 351.233 kb on + strand, within ABZR87_RS01675 at 351.234 kb on - strand, within ABZR87_RS01675 at 351.522 kb on + strand, within ABZR87_RS01675 at 351.663 kb on + strand, within ABZR87_RS01675 at 351.664 kb on - strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.891 kb on + strand at 351.892 kb on - strand at 351.897 kb on + strand at 351.898 kb on - strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.052 kb on - strand, within ABZR87_RS01680 at 352.396 kb on - strand at 352.396 kb on - strand at 352.450 kb on + strand at 352.451 kb on - strand at 352.451 kb on - strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.554 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 349,999 + ABZR87_RS01665 0.83 +0.9 350,000 - ABZR87_RS01665 0.83 +0.6 350,000 - ABZR87_RS01665 0.83 +0.2 350,000 - ABZR87_RS01665 0.83 -1.0 350,000 - ABZR87_RS01665 0.83 -0.6 350,000 - ABZR87_RS01665 0.83 -0.5 350,000 - ABZR87_RS01665 0.83 -0.4 350,122 + -0.1 350,123 - -0.1 350,123 - -0.8 350,123 - +0.8 350,123 - -0.3 350,146 + -0.3 350,146 + +1.5 350,146 + -0.7 350,146 + +0.2 350,146 + +0.3 350,147 - +1.5 350,147 - -1.1 350,147 - +0.3 350,147 - +0.5 350,180 + -0.0 350,181 - -2.0 350,266 + -0.0 350,267 - +0.2 350,364 + +0.2 350,364 + +0.5 350,365 - +0.1 350,365 - +0.7 350,595 + ABZR87_RS01670 0.45 -1.1 350,719 + ABZR87_RS01670 0.69 -0.2 350,803 + ABZR87_RS01670 0.86 +0.1 350,803 + ABZR87_RS01670 0.86 -0.2 350,804 - ABZR87_RS01670 0.86 -0.4 350,842 + +0.6 350,842 + -1.8 350,842 + -1.1 350,842 + +0.2 350,842 + +0.4 350,842 + -0.5 350,843 - +0.1 350,843 - -0.1 350,843 - +0.3 350,843 - +0.3 350,869 + +0.0 350,869 + -0.8 350,869 + +0.5 350,870 - -1.2 350,870 - +0.5 350,870 - +0.2 350,870 - +0.7 350,947 - -0.7 350,947 - -1.8 350,947 - +1.2 350,947 - +0.3 350,963 + +1.1 350,963 + +1.1 350,995 - -0.1 351,127 - ABZR87_RS01675 0.17 +1.8 351,192 + ABZR87_RS01675 0.24 +0.0 351,233 + ABZR87_RS01675 0.29 -0.2 351,234 - ABZR87_RS01675 0.29 +0.8 351,522 + ABZR87_RS01675 0.60 +1.8 351,663 + ABZR87_RS01675 0.75 -1.4 351,664 - ABZR87_RS01675 0.75 -0.4 351,741 + ABZR87_RS01675 0.83 +0.2 351,741 + ABZR87_RS01675 0.83 -0.6 351,891 + -1.9 351,892 - +1.4 351,897 + +0.2 351,898 - +0.2 351,921 + -0.2 351,921 + +0.5 351,921 + +0.5 351,921 + +0.9 351,921 + -0.3 351,922 - +0.1 351,922 - -0.3 351,922 - -0.4 351,922 - +0.2 351,922 - -0.3 351,922 - -0.2 352,002 + ABZR87_RS01680 0.20 +0.6 352,002 + ABZR87_RS01680 0.20 +1.2 352,002 + ABZR87_RS01680 0.20 +0.5 352,002 + ABZR87_RS01680 0.20 -0.4 352,002 + ABZR87_RS01680 0.20 +0.9 352,003 - ABZR87_RS01680 0.20 -0.2 352,003 - ABZR87_RS01680 0.20 +0.8 352,003 - ABZR87_RS01680 0.20 -0.4 352,003 - ABZR87_RS01680 0.20 +0.9 352,003 - ABZR87_RS01680 0.20 +0.6 352,003 - ABZR87_RS01680 0.20 +0.8 352,004 + ABZR87_RS01680 0.20 -0.4 352,004 + ABZR87_RS01680 0.20 +0.0 352,004 + ABZR87_RS01680 0.20 -0.0 352,005 - ABZR87_RS01680 0.21 -0.8 352,005 - ABZR87_RS01680 0.21 +0.4 352,005 - ABZR87_RS01680 0.21 -1.6 352,051 + ABZR87_RS01680 0.30 +0.6 352,051 + ABZR87_RS01680 0.30 +1.2 352,052 - ABZR87_RS01680 0.31 -0.4 352,396 - -0.9 352,396 - +0.6 352,450 + +0.0 352,451 - +0.1 352,451 - -0.6 352,467 + -0.2 352,467 + +0.0 352,467 + +0.0 352,467 + -0.1 352,467 + -0.1 352,468 - -0.0 352,468 - +0.2 352,468 - +0.4 352,468 - +0.1 352,554 + -0.6 352,629 + -0.6 352,629 + -1.6 352,629 + +0.2 352,630 - -1.3 352,630 - -0.6 352,630 - -0.3 352,630 - -0.5 352,630 - -0.6
Or see this region's nucleotide sequence