Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01605

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01595 and ABZR87_RS01600 are separated by 12 nucleotidesABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotidesABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotidesABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233 _RS01595 ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950 _RS01600 ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888 _RS01605 ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814 _RS01610 ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963 _RS01615 Position (kb) 336 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 336.105 kb on + strand, within ABZR87_RS01595at 336.105 kb on + strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.204 kb on + strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.309 kb on + strandat 336.309 kb on + strandat 336.310 kb on - strandat 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.390 kb on + strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.559 kb on + strand, within ABZR87_RS01600at 336.560 kb on - strand, within ABZR87_RS01600at 336.757 kb on + strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.886 kb on + strandat 336.886 kb on + strandat 336.887 kb on - strandat 336.931 kb on + strandat 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.186 kb on - strand, within ABZR87_RS01605at 337.302 kb on + strand, within ABZR87_RS01605at 337.632 kb on + strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.728 kb on + strand, within ABZR87_RS01605at 337.740 kb on + strand, within ABZR87_RS01605at 337.827 kb on + strandat 337.827 kb on + strandat 337.827 kb on + strandat 337.828 kb on - strandat 337.828 kb on - strandat 337.828 kb on - strandat 337.828 kb on - strandat 338.096 kb on + strand, within ABZR87_RS01610at 338.097 kb on - strand, within ABZR87_RS01610at 338.112 kb on - strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.163 kb on - strand, within ABZR87_RS01610at 338.163 kb on - strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.237 kb on + strand, within ABZR87_RS01610at 338.246 kb on + strand, within ABZR87_RS01610at 338.247 kb on - strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.458 kb on - strand, within ABZR87_RS01610at 338.576 kb on + strand, within ABZR87_RS01610at 338.576 kb on + strand, within ABZR87_RS01610at 338.577 kb on - strand, within ABZR87_RS01610at 338.577 kb on - strand, within ABZR87_RS01610at 338.689 kb on - strand, within ABZR87_RS01610at 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.865 kb on - strandat 338.865 kb on - strandat 338.868 kb on + strandat 338.868 kb on + strandat 338.868 kb on + strandat 338.869 kb on - strandat 338.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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336,105 + ABZR87_RS01595 0.87 -1.4
336,105 + ABZR87_RS01595 0.87 +0.0
336,106 - ABZR87_RS01595 0.87 -1.4
336,106 - ABZR87_RS01595 0.87 -0.6
336,106 - ABZR87_RS01595 0.87 +0.1
336,204 + +0.7
336,205 - -1.0
336,205 - -0.1
336,205 - +0.3
336,309 + +1.3
336,309 + +0.5
336,310 - +0.4
336,328 + ABZR87_RS01600 0.12 +0.2
336,328 + ABZR87_RS01600 0.12 +0.0
336,328 + ABZR87_RS01600 0.12 +0.3
336,328 + ABZR87_RS01600 0.12 +0.7
336,328 + ABZR87_RS01600 0.12 +0.2
336,328 + ABZR87_RS01600 0.12 +0.8
336,328 + ABZR87_RS01600 0.12 +0.2
336,328 + ABZR87_RS01600 0.12 +0.9
336,329 - ABZR87_RS01600 0.12 -0.7
336,329 - ABZR87_RS01600 0.12 +0.1
336,329 - ABZR87_RS01600 0.12 -0.3
336,329 - ABZR87_RS01600 0.12 +0.2
336,329 - ABZR87_RS01600 0.12 +0.6
336,329 - ABZR87_RS01600 0.12 +0.6
336,329 - ABZR87_RS01600 0.12 -0.2
336,390 + ABZR87_RS01600 0.20 +0.2
336,391 - ABZR87_RS01600 0.21 +0.6
336,391 - ABZR87_RS01600 0.21 -0.7
336,421 + ABZR87_RS01600 0.25 -0.5
336,421 + ABZR87_RS01600 0.25 +0.0
336,422 - ABZR87_RS01600 0.25 +0.0
336,422 - ABZR87_RS01600 0.25 +0.9
336,422 - ABZR87_RS01600 0.25 -0.7
336,481 + ABZR87_RS01600 0.33 +0.0
336,481 + ABZR87_RS01600 0.33 +0.5
336,482 - ABZR87_RS01600 0.33 +0.4
336,482 - ABZR87_RS01600 0.33 -1.8
336,482 - ABZR87_RS01600 0.33 +0.6
336,482 - ABZR87_RS01600 0.33 -0.9
336,559 + ABZR87_RS01600 0.44 -0.2
336,560 - ABZR87_RS01600 0.45 +0.6
336,757 + ABZR87_RS01600 0.72 +0.6
336,758 - ABZR87_RS01600 0.73 -0.4
336,758 - ABZR87_RS01600 0.73 +0.4
336,886 + -0.1
336,886 + -0.9
336,887 - +0.4
336,931 + -0.5
337,173 + ABZR87_RS01605 0.22 -0.8
337,173 + ABZR87_RS01605 0.22 -1.9
337,173 + ABZR87_RS01605 0.22 -0.4
337,173 + ABZR87_RS01605 0.22 -1.7
337,173 + ABZR87_RS01605 0.22 -1.8
337,173 + ABZR87_RS01605 0.22 -1.5
337,173 + ABZR87_RS01605 0.22 -1.6
337,173 + ABZR87_RS01605 0.22 -0.8
337,173 + ABZR87_RS01605 0.22 -1.1
337,173 + ABZR87_RS01605 0.22 -0.8
337,174 - ABZR87_RS01605 0.22 -2.2
337,174 - ABZR87_RS01605 0.22 -1.3
337,185 + ABZR87_RS01605 0.23 -0.4
337,185 + ABZR87_RS01605 0.23 -1.5
337,185 + ABZR87_RS01605 0.23 -1.9
337,186 - ABZR87_RS01605 0.23 -0.7
337,302 + ABZR87_RS01605 0.36 -0.6
337,632 + ABZR87_RS01605 0.72 -1.1
337,633 - ABZR87_RS01605 0.72 -1.1
337,633 - ABZR87_RS01605 0.72 -2.7
337,633 - ABZR87_RS01605 0.72 -3.4
337,633 - ABZR87_RS01605 0.72 -2.2
337,633 - ABZR87_RS01605 0.72 -1.7
337,728 + ABZR87_RS01605 0.82 -1.4
337,740 + ABZR87_RS01605 0.84 -2.7
337,827 + -0.1
337,827 + -0.2
337,827 + -2.1
337,828 - -0.8
337,828 - -1.0
337,828 - -1.1
337,828 - +0.8
338,096 + ABZR87_RS01610 0.21 +0.3
338,097 - ABZR87_RS01610 0.22 -0.5
338,112 - ABZR87_RS01610 0.23 -1.4
338,162 + ABZR87_RS01610 0.29 +0.4
338,162 + ABZR87_RS01610 0.29 +0.2
338,162 + ABZR87_RS01610 0.29 -0.9
338,162 + ABZR87_RS01610 0.29 -0.2
338,163 - ABZR87_RS01610 0.29 -0.4
338,163 - ABZR87_RS01610 0.29 -0.4
338,234 + ABZR87_RS01610 0.37 -0.3
338,234 + ABZR87_RS01610 0.37 +1.8
338,234 + ABZR87_RS01610 0.37 -0.4
338,235 - ABZR87_RS01610 0.37 +0.7
338,235 - ABZR87_RS01610 0.37 +0.5
338,235 - ABZR87_RS01610 0.37 +0.4
338,235 - ABZR87_RS01610 0.37 +0.4
338,235 - ABZR87_RS01610 0.37 +0.0
338,237 + ABZR87_RS01610 0.37 -0.5
338,246 + ABZR87_RS01610 0.38 +0.1
338,247 - ABZR87_RS01610 0.38 +0.9
338,303 + ABZR87_RS01610 0.44 +0.8
338,303 + ABZR87_RS01610 0.44 -0.0
338,303 + ABZR87_RS01610 0.44 -1.0
338,303 + ABZR87_RS01610 0.44 -1.0
338,304 - ABZR87_RS01610 0.44 +0.3
338,304 - ABZR87_RS01610 0.44 +0.3
338,304 - ABZR87_RS01610 0.44 +1.5
338,458 - ABZR87_RS01610 0.61 +1.1
338,576 + ABZR87_RS01610 0.74 -1.4
338,576 + ABZR87_RS01610 0.74 -0.2
338,577 - ABZR87_RS01610 0.74 +0.2
338,577 - ABZR87_RS01610 0.74 -0.1
338,689 - ABZR87_RS01610 0.86 -0.1
338,864 + -0.9
338,864 + +0.1
338,864 + -0.3
338,864 + +0.8
338,864 + -1.0
338,864 + +0.0
338,864 + -0.2
338,864 + +0.1
338,864 + -0.7
338,864 + -0.5
338,864 + -0.5
338,865 - +0.6
338,865 - +0.6
338,868 + -0.3
338,868 + -0.5
338,868 + +0.1
338,869 - -0.2
338,878 + +0.8

Or see this region's nucleotide sequence