Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00970

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotidesABZR87_RS00970 and ABZR87_RS00975 are separated by 135 nucleotides ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076 _RS00970 ABZR87_RS00975: ABZR87_RS00975 - molecular chaperone DnaK, at 194,212 to 196,164 _RS00975 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.225 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.300 kb on - strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.366 kb on + strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.579 kb on - strand, within ABZR87_RS00965at 192.680 kb on + strandat 192.680 kb on + strandat 192.680 kb on + strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.689 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.827 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.874 kb on - strandat 192.883 kb on - strandat 192.911 kb on + strandat 192.917 kb on + strandat 192.917 kb on + strandat 192.918 kb on - strandat 192.918 kb on - strandat 192.929 kb on + strandat 192.929 kb on + strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.949 kb on + strandat 192.950 kb on - strandat 192.950 kb on - strandat 192.950 kb on - strandat 193.082 kb on + strand, within ABZR87_RS00970at 193.082 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.357 kb on - strand, within ABZR87_RS00970at 194.118 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.185 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.214 kb on - strandat 194.214 kb on - strandat 194.256 kb on + strandat 194.354 kb on + strandat 194.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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192,225 - ABZR87_RS00965 0.71 -0.1
192,258 - ABZR87_RS00965 0.73 -0.2
192,258 - ABZR87_RS00965 0.73 -0.3
192,299 + ABZR87_RS00965 0.75 +0.5
192,299 + ABZR87_RS00965 0.75 -0.2
192,300 - ABZR87_RS00965 0.75 -0.5
192,305 + ABZR87_RS00965 0.75 -0.5
192,305 + ABZR87_RS00965 0.75 -0.0
192,306 - ABZR87_RS00965 0.75 -1.7
192,306 - ABZR87_RS00965 0.75 -0.0
192,306 - ABZR87_RS00965 0.75 +0.3
192,317 + ABZR87_RS00965 0.76 +1.1
192,317 + ABZR87_RS00965 0.76 -0.0
192,318 - ABZR87_RS00965 0.76 +0.7
192,318 - ABZR87_RS00965 0.76 +0.7
192,318 - ABZR87_RS00965 0.76 +0.2
192,318 - ABZR87_RS00965 0.76 -0.4
192,318 - ABZR87_RS00965 0.76 +0.0
192,366 + ABZR87_RS00965 0.78 -2.2
192,367 - ABZR87_RS00965 0.78 +0.6
192,367 - ABZR87_RS00965 0.78 +0.1
192,367 - ABZR87_RS00965 0.78 -0.7
192,368 + ABZR87_RS00965 0.78 -0.3
192,368 + ABZR87_RS00965 0.78 -0.2
192,368 + ABZR87_RS00965 0.78 -0.5
192,368 + ABZR87_RS00965 0.78 -0.3
192,368 + ABZR87_RS00965 0.78 +1.4
192,368 + ABZR87_RS00965 0.78 -0.6
192,368 + ABZR87_RS00965 0.78 +0.3
192,368 + ABZR87_RS00965 0.78 +0.5
192,368 + ABZR87_RS00965 0.78 -0.9
192,369 - ABZR87_RS00965 0.78 +0.3
192,369 - ABZR87_RS00965 0.78 -0.3
192,369 - ABZR87_RS00965 0.78 -0.4
192,369 - ABZR87_RS00965 0.78 -0.1
192,369 - ABZR87_RS00965 0.78 -0.4
192,378 - ABZR87_RS00965 0.79 +0.2
192,378 - ABZR87_RS00965 0.79 +1.0
192,579 - ABZR87_RS00965 0.90 +0.4
192,680 + +0.3
192,680 + +0.5
192,680 + -0.3
192,681 - +0.4
192,681 - +0.8
192,681 - -0.1
192,681 - +0.2
192,689 + +0.2
192,808 + -0.3
192,808 + +0.5
192,808 + +0.5
192,809 - -0.7
192,809 - +0.5
192,809 - -0.5
192,827 + -0.4
192,865 + +0.4
192,865 + +0.1
192,865 + +0.2
192,865 + -0.1
192,865 + +0.4
192,865 + -0.0
192,865 + +1.0
192,866 - -0.6
192,866 - +0.0
192,866 - +0.4
192,866 - -0.5
192,866 - +0.7
192,866 - +0.2
192,866 - +0.3
192,874 - +0.2
192,883 - +0.6
192,911 + -0.4
192,917 + -0.6
192,917 + +0.3
192,918 - +0.4
192,918 - -0.7
192,929 + +0.4
192,929 + -0.3
192,930 - -0.1
192,930 - +0.1
192,930 - +0.4
192,949 + -0.0
192,950 - +0.3
192,950 - +0.2
192,950 - -0.0
193,082 + ABZR87_RS00970 0.13 +0.6
193,082 + ABZR87_RS00970 0.13 -1.2
193,313 + ABZR87_RS00970 0.34 +0.1
193,313 + ABZR87_RS00970 0.34 -0.9
193,357 - ABZR87_RS00970 0.37 -0.2
194,118 - -1.5
194,181 - -0.1
194,181 - +0.3
194,181 - -0.3
194,185 + -0.3
194,213 + +0.9
194,213 + -0.5
194,213 + +0.7
194,213 + -0.0
194,214 - +0.6
194,214 - +1.3
194,256 + +0.8
194,354 + +0.6
194,355 - +2.0

Or see this region's nucleotide sequence