Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00835

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00825 and ABZR87_RS00830 are separated by 148 nucleotidesABZR87_RS00830 and ABZR87_RS00835 are separated by 148 nucleotidesABZR87_RS00835 and ABZR87_RS00840 are separated by 86 nucleotides ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945 _RS00825 ABZR87_RS00830: ABZR87_RS00830 - pyrimidine/purine nucleoside phosphorylase, at 167,094 to 167,411 _RS00830 ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897 _RS00835 ABZR87_RS00840: ABZR87_RS00840 - ornithine carbamoyltransferase, at 168,984 to 169,910 _RS00840 Position (kb) 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 166.943 kb on + strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 167.023 kb on + strandat 167.024 kb on - strandat 167.046 kb on + strandat 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.146 kb on - strand, within ABZR87_RS00830at 167.146 kb on - strand, within ABZR87_RS00830at 167.177 kb on + strand, within ABZR87_RS00830at 167.178 kb on - strand, within ABZR87_RS00830at 167.286 kb on + strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.386 kb on - strandat 167.386 kb on - strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.404 kb on - strandat 167.427 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.474 kb on - strandat 167.474 kb on - strandat 167.474 kb on - strandat 167.674 kb on + strandat 167.680 kb on + strandat 167.680 kb on + strandat 167.680 kb on + strandat 167.681 kb on - strandat 167.681 kb on - strandat 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.717 kb on - strand, within ABZR87_RS00835at 167.717 kb on - strand, within ABZR87_RS00835at 167.747 kb on - strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.855 kb on - strand, within ABZR87_RS00835at 167.855 kb on - strand, within ABZR87_RS00835at 167.980 kb on + strand, within ABZR87_RS00835at 167.986 kb on + strand, within ABZR87_RS00835at 168.019 kb on + strand, within ABZR87_RS00835at 168.019 kb on + strand, within ABZR87_RS00835at 168.130 kb on + strand, within ABZR87_RS00835at 168.131 kb on - strand, within ABZR87_RS00835at 168.433 kb on + strand, within ABZR87_RS00835at 168.433 kb on + strand, within ABZR87_RS00835at 168.433 kb on + strand, within ABZR87_RS00835at 168.434 kb on - strand, within ABZR87_RS00835at 168.434 kb on - strand, within ABZR87_RS00835at 168.434 kb on - strand, within ABZR87_RS00835at 168.434 kb on - strand, within ABZR87_RS00835at 168.434 kb on - strand, within ABZR87_RS00835at 168.470 kb on - strand, within ABZR87_RS00835at 168.517 kb on + strand, within ABZR87_RS00835at 168.517 kb on + strand, within ABZR87_RS00835at 168.517 kb on + strand, within ABZR87_RS00835at 168.553 kb on + strand, within ABZR87_RS00835at 168.554 kb on - strand, within ABZR87_RS00835at 168.703 kb on + strand, within ABZR87_RS00835at 168.704 kb on - strand, within ABZR87_RS00835at 168.827 kb on - strandat 168.827 kb on - strandat 168.827 kb on - strandat 168.895 kb on + strandat 168.895 kb on + strandat 168.896 kb on - strandat 168.896 kb on - strandat 168.955 kb on + strandat 168.956 kb on - strandat 168.956 kb on - strandat 168.989 kb on - strandat 169.342 kb on + strand, within ABZR87_RS00840at 169.798 kb on + strand, within ABZR87_RS00840at 169.843 kb on + strandat 169.843 kb on + strandat 169.844 kb on - strandat 169.844 kb on - strandat 169.844 kb on - strandat 169.850 kb on - strandat 169.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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166,943 + -0.4
166,944 - +0.6
166,944 - +0.4
166,944 - -0.0
166,944 - +1.1
166,944 - +1.3
167,023 + -0.3
167,024 - -0.6
167,046 + -0.2
167,145 + ABZR87_RS00830 0.16 -0.0
167,145 + ABZR87_RS00830 0.16 -2.0
167,145 + ABZR87_RS00830 0.16 +0.2
167,145 + ABZR87_RS00830 0.16 -0.6
167,145 + ABZR87_RS00830 0.16 -0.5
167,146 - ABZR87_RS00830 0.16 -2.9
167,146 - ABZR87_RS00830 0.16 -0.7
167,177 + ABZR87_RS00830 0.26 -0.7
167,178 - ABZR87_RS00830 0.26 -2.2
167,286 + ABZR87_RS00830 0.60 -0.8
167,287 - ABZR87_RS00830 0.61 -2.1
167,287 - ABZR87_RS00830 0.61 -1.9
167,287 - ABZR87_RS00830 0.61 -0.3
167,386 - -0.8
167,386 - -1.3
167,391 + -0.1
167,391 + -0.2
167,391 + -0.3
167,391 + -1.1
167,391 + +0.6
167,391 + +0.5
167,391 + +0.7
167,391 + +1.1
167,391 + +0.1
167,391 + -0.1
167,392 - -1.8
167,392 - -0.9
167,392 - -0.2
167,392 - -0.9
167,392 - -1.4
167,404 - -2.9
167,427 + -0.4
167,473 + +0.4
167,473 + -0.4
167,473 + -0.2
167,473 + +0.7
167,473 + +0.9
167,474 - -2.8
167,474 - -1.9
167,474 - -4.3
167,674 + -1.5
167,680 + -1.6
167,680 + -1.9
167,680 + -2.3
167,681 - -2.0
167,681 - -1.4
167,716 + ABZR87_RS00835 0.12 -0.3
167,716 + ABZR87_RS00835 0.12 -0.8
167,716 + ABZR87_RS00835 0.12 -2.2
167,716 + ABZR87_RS00835 0.12 -0.5
167,716 + ABZR87_RS00835 0.12 -2.2
167,717 - ABZR87_RS00835 0.12 -1.6
167,717 - ABZR87_RS00835 0.12 +1.1
167,747 - ABZR87_RS00835 0.14 -0.5
167,850 + ABZR87_RS00835 0.22 -2.4
167,850 + ABZR87_RS00835 0.22 -3.4
167,850 + ABZR87_RS00835 0.22 -2.5
167,850 + ABZR87_RS00835 0.22 -0.8
167,850 + ABZR87_RS00835 0.22 -0.8
167,851 - ABZR87_RS00835 0.22 -2.4
167,851 - ABZR87_RS00835 0.22 -1.3
167,851 - ABZR87_RS00835 0.22 -1.8
167,851 - ABZR87_RS00835 0.22 -1.3
167,851 - ABZR87_RS00835 0.22 -2.3
167,855 - ABZR87_RS00835 0.22 -3.0
167,855 - ABZR87_RS00835 0.22 -1.9
167,980 + ABZR87_RS00835 0.31 -1.6
167,986 + ABZR87_RS00835 0.32 -2.0
168,019 + ABZR87_RS00835 0.34 -0.8
168,019 + ABZR87_RS00835 0.34 -0.7
168,130 + ABZR87_RS00835 0.43 -3.2
168,131 - ABZR87_RS00835 0.43 -1.8
168,433 + ABZR87_RS00835 0.65 -2.0
168,433 + ABZR87_RS00835 0.65 -0.9
168,433 + ABZR87_RS00835 0.65 -1.1
168,434 - ABZR87_RS00835 0.65 -2.0
168,434 - ABZR87_RS00835 0.65 -2.2
168,434 - ABZR87_RS00835 0.65 -1.6
168,434 - ABZR87_RS00835 0.65 -2.4
168,434 - ABZR87_RS00835 0.65 -1.8
168,470 - ABZR87_RS00835 0.68 -2.4
168,517 + ABZR87_RS00835 0.72 -1.6
168,517 + ABZR87_RS00835 0.72 -2.8
168,517 + ABZR87_RS00835 0.72 -2.2
168,553 + ABZR87_RS00835 0.74 -1.4
168,554 - ABZR87_RS00835 0.74 -0.9
168,703 + ABZR87_RS00835 0.85 -1.5
168,704 - ABZR87_RS00835 0.86 -1.6
168,827 - -2.1
168,827 - -1.8
168,827 - -0.1
168,895 + +0.0
168,895 + +0.8
168,896 - +0.2
168,896 - -0.9
168,955 + -0.1
168,956 - +0.3
168,956 - -1.0
168,989 - +0.3
169,342 + ABZR87_RS00840 0.39 -0.5
169,798 + ABZR87_RS00840 0.88 -0.6
169,843 + +0.4
169,843 + -0.3
169,844 - -0.3
169,844 - -0.9
169,844 - -1.6
169,850 - -1.0
169,882 + -1.3

Or see this region's nucleotide sequence