Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00160 and ABZR87_RS00165 overlap by 1 nucleotides ABZR87_RS00165 and ABZR87_RS00170 overlap by 4 nucleotides ABZR87_RS00170 and ABZR87_RS00175 are separated by 29 nucleotides ABZR87_RS00175 and ABZR87_RS00180 are separated by 125 nucleotides
ABZR87_RS00160: ABZR87_RS00160 - LPS export ABC transporter permease LptG, at 32,177 to 33,373
_RS00160
ABZR87_RS00165: ABZR87_RS00165 - CbiX/SirB N-terminal domain-containing protein, at 33,373 to 33,744
_RS00165
ABZR87_RS00170: ABZR87_RS00170 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 33,741 to 34,157
_RS00170
ABZR87_RS00175: ABZR87_RS00175 - LysR family transcriptional regulator, at 34,187 to 35,083
_RS00175
ABZR87_RS00180: ABZR87_RS00180 - NAD(P)-dependent alcohol dehydrogenase, at 35,209 to 36,225
_RS00180
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.531 kb on + strand, within ABZR87_RS00165 at 33.743 kb on - strand at 33.856 kb on + strand, within ABZR87_RS00170 at 33.905 kb on + strand, within ABZR87_RS00170 at 34.053 kb on + strand, within ABZR87_RS00170 at 34.054 kb on - strand, within ABZR87_RS00170 at 34.054 kb on - strand, within ABZR87_RS00170 at 34.054 kb on - strand, within ABZR87_RS00170 at 34.054 kb on - strand, within ABZR87_RS00170 at 34.054 kb on - strand, within ABZR87_RS00170 at 34.135 kb on + strand at 34.136 kb on - strand at 34.136 kb on - strand at 34.180 kb on + strand at 34.180 kb on + strand at 34.181 kb on - strand at 34.181 kb on - strand at 34.181 kb on - strand at 34.461 kb on + strand, within ABZR87_RS00175 at 34.763 kb on + strand, within ABZR87_RS00175 at 34.763 kb on + strand, within ABZR87_RS00175 at 35.062 kb on - strand at 35.065 kb on + strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.138 kb on + strand at 35.139 kb on - strand at 35.139 kb on - strand at 35.139 kb on - strand at 35.329 kb on + strand, within ABZR87_RS00180 at 35.330 kb on - strand, within ABZR87_RS00180 at 35.330 kb on - strand, within ABZR87_RS00180 at 35.845 kb on + strand, within ABZR87_RS00180 at 35.846 kb on - strand, within ABZR87_RS00180 at 35.846 kb on - strand, within ABZR87_RS00180 at 35.992 kb on + strand, within ABZR87_RS00180 at 35.992 kb on + strand, within ABZR87_RS00180 at 36.050 kb on + strand, within ABZR87_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 33,531 + ABZR87_RS00165 0.42 -1.2 33,743 - +0.5 33,856 + ABZR87_RS00170 0.28 +1.0 33,905 + ABZR87_RS00170 0.39 -0.8 34,053 + ABZR87_RS00170 0.75 +0.7 34,054 - ABZR87_RS00170 0.75 +0.0 34,054 - ABZR87_RS00170 0.75 +1.2 34,054 - ABZR87_RS00170 0.75 +0.9 34,054 - ABZR87_RS00170 0.75 +0.5 34,054 - ABZR87_RS00170 0.75 +0.3 34,135 + +0.2 34,136 - -0.7 34,136 - -0.3 34,180 + +0.0 34,180 + -0.1 34,181 - +0.2 34,181 - +0.2 34,181 - -0.1 34,461 + ABZR87_RS00175 0.31 +0.1 34,763 + ABZR87_RS00175 0.64 -0.6 34,763 + ABZR87_RS00175 0.64 -0.1 35,062 - -0.2 35,065 + -0.6 35,066 - +0.5 35,066 - +1.2 35,066 - +1.0 35,066 - +1.5 35,066 - +0.0 35,138 + -0.5 35,139 - +0.0 35,139 - +1.0 35,139 - +1.4 35,329 + ABZR87_RS00180 0.12 +0.7 35,330 - ABZR87_RS00180 0.12 -0.8 35,330 - ABZR87_RS00180 0.12 +0.4 35,845 + ABZR87_RS00180 0.63 -0.1 35,846 - ABZR87_RS00180 0.63 +0.2 35,846 - ABZR87_RS00180 0.63 -0.1 35,992 + ABZR87_RS00180 0.77 -0.1 35,992 + ABZR87_RS00180 0.77 -0.4 36,050 + ABZR87_RS00180 0.83 +0.3
Or see this region's nucleotide sequence