Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004436 and ABIE53_004437 are separated by 26 nucleotides ABIE53_004437 and ABIE53_004438 are separated by 99 nucleotides
ABIE53_004436: ABIE53_004436 - hypothetical protein, at 627,149 to 628,507
_004436
ABIE53_004437: ABIE53_004437 - CitMHS family citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, at 628,534 to 629,838
_004437
ABIE53_004438: ABIE53_004438 - DNA-binding transcriptional LysR family regulator, at 629,938 to 630,834
_004438
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.568 kb on + strand, within ABIE53_004436 at 627.568 kb on + strand, within ABIE53_004436 at 627.569 kb on - strand, within ABIE53_004436 at 627.672 kb on + strand, within ABIE53_004436 at 627.672 kb on + strand, within ABIE53_004436 at 627.673 kb on - strand, within ABIE53_004436 at 627.696 kb on + strand, within ABIE53_004436 at 627.696 kb on + strand, within ABIE53_004436 at 627.697 kb on - strand, within ABIE53_004436 at 627.698 kb on + strand, within ABIE53_004436 at 627.699 kb on - strand, within ABIE53_004436 at 627.849 kb on + strand, within ABIE53_004436 at 627.966 kb on - strand, within ABIE53_004436 at 627.966 kb on - strand, within ABIE53_004436 at 628.047 kb on + strand, within ABIE53_004436 at 628.048 kb on - strand, within ABIE53_004436 at 628.113 kb on + strand, within ABIE53_004436 at 628.113 kb on + strand, within ABIE53_004436 at 628.114 kb on - strand, within ABIE53_004436 at 628.398 kb on + strand at 628.547 kb on - strand at 628.818 kb on + strand, within ABIE53_004437 at 628.819 kb on - strand, within ABIE53_004437 at 628.819 kb on - strand, within ABIE53_004437 at 629.030 kb on + strand, within ABIE53_004437 at 629.116 kb on + strand, within ABIE53_004437 at 629.117 kb on - strand, within ABIE53_004437 at 629.453 kb on + strand, within ABIE53_004437 at 629.453 kb on + strand, within ABIE53_004437 at 629.633 kb on + strand, within ABIE53_004437 at 629.634 kb on - strand, within ABIE53_004437 at 629.863 kb on + strand at 629.878 kb on + strand at 629.879 kb on - strand at 629.879 kb on - strand at 629.895 kb on + strand at 629.937 kb on + strand at 630.226 kb on - strand, within ABIE53_004438 at 630.226 kb on - strand, within ABIE53_004438 at 630.342 kb on + strand, within ABIE53_004438 at 630.342 kb on + strand, within ABIE53_004438 at 630.342 kb on + strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.343 kb on - strand, within ABIE53_004438 at 630.472 kb on - strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.613 kb on + strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.614 kb on - strand, within ABIE53_004438 at 630.662 kb on + strand, within ABIE53_004438 at 630.662 kb on + strand, within ABIE53_004438 at 630.663 kb on - strand, within ABIE53_004438
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 627,568 + ABIE53_004436 0.31 +1.5 627,568 + ABIE53_004436 0.31 +0.5 627,569 - ABIE53_004436 0.31 +1.0 627,672 + ABIE53_004436 0.38 +0.3 627,672 + ABIE53_004436 0.38 -1.4 627,673 - ABIE53_004436 0.39 -2.2 627,696 + ABIE53_004436 0.40 +0.8 627,696 + ABIE53_004436 0.40 -0.2 627,697 - ABIE53_004436 0.40 -0.7 627,698 + ABIE53_004436 0.40 -0.3 627,699 - ABIE53_004436 0.40 +0.6 627,849 + ABIE53_004436 0.52 +1.2 627,966 - ABIE53_004436 0.60 +0.0 627,966 - ABIE53_004436 0.60 +0.1 628,047 + ABIE53_004436 0.66 -0.1 628,048 - ABIE53_004436 0.66 +0.5 628,113 + ABIE53_004436 0.71 +3.1 628,113 + ABIE53_004436 0.71 +1.1 628,114 - ABIE53_004436 0.71 +1.5 628,398 + -0.8 628,547 - -0.9 628,818 + ABIE53_004437 0.22 -0.5 628,819 - ABIE53_004437 0.22 +0.1 628,819 - ABIE53_004437 0.22 +0.1 629,030 + ABIE53_004437 0.38 +1.2 629,116 + ABIE53_004437 0.45 -0.4 629,117 - ABIE53_004437 0.45 -0.2 629,453 + ABIE53_004437 0.70 +1.1 629,453 + ABIE53_004437 0.70 -0.2 629,633 + ABIE53_004437 0.84 +1.3 629,634 - ABIE53_004437 0.84 +1.2 629,863 + +0.1 629,878 + -0.4 629,879 - -1.3 629,879 - +2.1 629,895 + -0.4 629,937 + +0.3 630,226 - ABIE53_004438 0.32 +0.4 630,226 - ABIE53_004438 0.32 -0.8 630,342 + ABIE53_004438 0.45 -0.1 630,342 + ABIE53_004438 0.45 -0.3 630,342 + ABIE53_004438 0.45 -1.2 630,343 - ABIE53_004438 0.45 -0.6 630,343 - ABIE53_004438 0.45 -0.2 630,343 - ABIE53_004438 0.45 +0.2 630,343 - ABIE53_004438 0.45 +0.3 630,343 - ABIE53_004438 0.45 +0.3 630,343 - ABIE53_004438 0.45 -0.5 630,472 - ABIE53_004438 0.60 -0.3 630,613 + ABIE53_004438 0.75 -1.9 630,613 + ABIE53_004438 0.75 +0.3 630,613 + ABIE53_004438 0.75 +0.8 630,613 + ABIE53_004438 0.75 +1.5 630,613 + ABIE53_004438 0.75 -0.2 630,613 + ABIE53_004438 0.75 -0.1 630,613 + ABIE53_004438 0.75 +0.7 630,613 + ABIE53_004438 0.75 -0.3 630,613 + ABIE53_004438 0.75 -0.1 630,613 + ABIE53_004438 0.75 -1.4 630,614 - ABIE53_004438 0.75 -1.2 630,614 - ABIE53_004438 0.75 +1.1 630,614 - ABIE53_004438 0.75 -1.0 630,614 - ABIE53_004438 0.75 -0.1 630,614 - ABIE53_004438 0.75 +0.4 630,614 - ABIE53_004438 0.75 -0.4 630,614 - ABIE53_004438 0.75 +0.0 630,614 - ABIE53_004438 0.75 -0.7 630,614 - ABIE53_004438 0.75 -0.3 630,614 - ABIE53_004438 0.75 +1.1 630,614 - ABIE53_004438 0.75 -0.4 630,662 + ABIE53_004438 0.81 -0.4 630,662 + ABIE53_004438 0.81 -0.2 630,663 - ABIE53_004438 0.81 +0.8
Or see this region's nucleotide sequence