Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003307

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,727,961	+		ABIE53_003306	0.24	+0.3
3,727,961	+		ABIE53_003306	0.24	-1.6
3,727,962	-		ABIE53_003306	0.25	-1.2
3,727,962	-		ABIE53_003306	0.25	-1.7
3,728,052	-		ABIE53_003306	0.32	-0.9
3,728,052	-		ABIE53_003306	0.32	-1.6
3,728,090	+		ABIE53_003306	0.36	-0.4
3,728,090	+		ABIE53_003306	0.36	-0.1
3,728,091	-		ABIE53_003306	0.36	-0.9
3,728,112	+		ABIE53_003306	0.37	+0.1
3,728,134	-		ABIE53_003306	0.39	+0.2
3,728,134	-		ABIE53_003306	0.39	-1.6
3,728,202	+		ABIE53_003306	0.45	-1.0
3,728,203	-		ABIE53_003306	0.45	+0.8
3,728,203	-		ABIE53_003306	0.45	-1.4
3,728,465	+		ABIE53_003306	0.68	+0.3
3,728,465	+		ABIE53_003306	0.68	+0.7
3,728,465	+		ABIE53_003306	0.68	-0.2
3,728,465	+		ABIE53_003306	0.68	-0.7
3,728,466	-		ABIE53_003306	0.68	-1.8
3,728,468	+		ABIE53_003306	0.68	-0.8
3,728,468	+		ABIE53_003306	0.68	+0.4
3,728,468	+		ABIE53_003306	0.68	-0.4
3,728,468	+		ABIE53_003306	0.68	-0.1
3,728,468	+		ABIE53_003306	0.68	-1.1
3,728,468	+		ABIE53_003306	0.68	-1.6
3,728,468	+		ABIE53_003306	0.68	-1.3
3,728,468	+		ABIE53_003306	0.68	+0.6
3,728,468	+		ABIE53_003306	0.68	-1.8
3,728,469	-		ABIE53_003306	0.68	-0.7
3,728,469	-		ABIE53_003306	0.68	+0.5
3,728,469	-		ABIE53_003306	0.68	-0.6
3,728,469	-		ABIE53_003306	0.68	-1.1
3,728,469	-		ABIE53_003306	0.68	-1.0
3,728,469	-		ABIE53_003306	0.68	-0.6
3,728,469	-		ABIE53_003306	0.68	-1.4
3,728,575	+		ABIE53_003306	0.77	+0.1
3,728,575	+		ABIE53_003306	0.77	-1.0
3,728,575	+		ABIE53_003306	0.77	-0.8
3,728,575	+		ABIE53_003306	0.77	-0.2
3,728,576	-		ABIE53_003306	0.78	-2.8
3,728,743	+				+0.3
3,728,743	+				+0.9
3,728,762	-				-1.1
3,728,762	-				+0.1
3,728,924	+		ABIE53_003307	0.29	+2.1
3,728,926	+		ABIE53_003307	0.30	-0.7
3,728,926	+		ABIE53_003307	0.30	-1.5
3,728,926	+		ABIE53_003307	0.30	-0.4
3,728,927	-		ABIE53_003307	0.30	-1.3
3,728,927	-		ABIE53_003307	0.30	-0.2
3,728,927	-		ABIE53_003307	0.30	-0.8
3,728,927	-		ABIE53_003307	0.30	-0.8
3,728,927	-		ABIE53_003307	0.30	-1.8
3,728,927	-		ABIE53_003307	0.30	-1.0
3,728,927	-		ABIE53_003307	0.30	-1.2
3,728,927	-		ABIE53_003307	0.30	-1.1
3,728,927	-		ABIE53_003307	0.30	+0.9
3,729,004	+		ABIE53_003307	0.55	-1.3
3,729,004	+		ABIE53_003307	0.55	+0.3
3,729,004	+		ABIE53_003307	0.55	-1.6
3,729,005	-		ABIE53_003307	0.55	-0.8
3,729,070	+		ABIE53_003307	0.76	+2.1
3,729,070	+		ABIE53_003307	0.76	+0.8
3,729,070	+		ABIE53_003307	0.76	+0.5
3,729,070	+		ABIE53_003307	0.76	-1.6
3,729,070	+		ABIE53_003307	0.76	-0.6
3,729,070	+		ABIE53_003307	0.76	+0.2
3,729,070	+		ABIE53_003307	0.76	-1.2
3,729,070	+		ABIE53_003307	0.76	-1.5
3,729,070	+		ABIE53_003307	0.76	-0.1
3,729,071	-		ABIE53_003307	0.76	-0.5
3,729,071	-		ABIE53_003307	0.76	+0.4
3,729,071	-		ABIE53_003307	0.76	-0.2
3,729,071	-		ABIE53_003307	0.76	-0.4
3,729,071	-		ABIE53_003307	0.76	+0.0
3,729,071	-		ABIE53_003307	0.76	-0.4
3,729,071	-		ABIE53_003307	0.76	-1.3
3,729,071	-		ABIE53_003307	0.76	+0.2
3,729,071	-		ABIE53_003307	0.76	-0.7
3,729,071	-		ABIE53_003307	0.76	-0.2
3,729,071	-		ABIE53_003307	0.76	-0.5
3,729,071	-		ABIE53_003307	0.76	-0.8
3,729,071	-		ABIE53_003307	0.76	-0.7
3,729,071	-		ABIE53_003307	0.76	+0.2
3,729,071	-		ABIE53_003307	0.76	-0.9
3,729,071	-		ABIE53_003307	0.76	+0.7
3,729,071	-		ABIE53_003307	0.76	-0.4
3,729,071	-		ABIE53_003307	0.76	-0.8
3,729,071	-		ABIE53_003307	0.76	-0.8
3,729,071	-		ABIE53_003307	0.76	-0.7
3,729,071	-		ABIE53_003307	0.76	-1.6
3,729,071	-		ABIE53_003307	0.76	-0.3
3,729,071	-		ABIE53_003307	0.76	+0.0
3,729,071	-		ABIE53_003307	0.76	+0.2
3,729,071	-		ABIE53_003307	0.76	+1.5
3,729,111	+		ABIE53_003307	0.89	-0.3
3,729,112	-		ABIE53_003307	0.89	+0.3
3,729,112	-		ABIE53_003307	0.89	-0.7
3,729,112	-		ABIE53_003307	0.89	-0.9
3,729,112	-		ABIE53_003307	0.89	+0.3
3,729,112	-		ABIE53_003307	0.89	+0.7
3,729,138	-				+0.3
3,729,147	-				-1.0
3,729,147	-				-0.1
3,729,147	-				-0.5
3,729,147	-				-0.1
3,729,147	-				-0.0
3,729,147	-				+0.6
3,729,147	-				-1.2
3,729,147	-				+0.7
3,729,157	+				+0.0
3,729,157	+				+1.0
3,729,157	+				-0.1
3,729,158	-				-0.4
3,729,158	-				+0.5
3,729,158	-				-1.5
3,729,158	-				-0.3
3,729,158	-				-1.4
3,729,158	-				-0.7
3,729,158	-				-0.2
3,729,165	+				-0.2
3,729,165	+				-0.4
3,729,166	-				-1.0
3,729,166	-				-0.3
3,729,166	-				+0.4
3,729,166	-				-1.0
3,729,166	-				+0.3
3,729,166	-				+0.3
3,729,166	-				+0.1
3,729,166	-				-0.2
3,729,166	-				-0.8
3,729,333	+				-0.2
3,729,419	+				+0.3
3,729,419	+				+0.5
3,729,419	+				-0.2
3,729,419	+				+2.1
3,729,419	+				-0.4
3,729,419	+				+1.5
3,729,420	-				-0.4
3,729,420	-				+0.3
3,729,420	-				-1.6
3,729,420	-				-0.3
3,729,420	-				+0.8
3,729,459	+				-0.7
3,729,459	+				-0.7
3,729,459	+				-1.6
3,729,460	-				+0.7
3,729,460	-				+0.1
3,729,460	-				+0.1
3,729,540	-				+0.5
3,729,666	+				-0.6
3,729,667	-				+0.2
3,729,667	-				+0.0
3,729,667	-				-0.3
3,729,679	+				+1.5
3,729,679	+				-0.4
3,729,679	+				+0.9
3,729,679	+				-0.4
3,729,679	+				+1.5
3,729,679	+				-1.8
3,729,680	-				-0.3
3,729,680	-				+1.1
3,729,680	-				+0.3
3,729,680	-				-1.7
3,729,680	-				+1.3
3,729,706	+				+0.0
3,729,706	+				-1.0
3,729,902	+				-1.6
3,729,902	+				+0.2
3,729,902	+				-0.8
3,729,902	+				-1.6
3,729,902	+				+0.5
3,729,902	+				-1.0
3,729,902	+				-0.4
3,729,902	+				-2.6
3,729,902	+				-0.6
3,729,903	-				-2.3
3,729,903	-				-1.2
3,729,903	-				-0.9
3,729,903	-				-1.4
3,729,903	-				-0.5
3,729,903	-				-2.4
3,730,008	+				-1.4
3,730,008	+				+1.1
3,730,009	-				+0.4
3,730,009	-				-0.6
3,730,009	-				-0.6
3,730,065	-				-0.9
3,730,071	+				+0.1
3,730,071	+				-0.8
3,730,071	+				-1.9
3,730,071	+				+0.1
3,730,071	+				+0.4
3,730,071	+				+0.4
3,730,071	+				-0.2
3,730,071	+				-1.6
3,730,072	-				-0.7
3,730,072	-				+0.4
3,730,072	-				+1.9
3,730,072	-				-0.5
3,730,072	-				-0.0
3,730,072	-				-0.7
3,730,072	-				-0.1
3,730,072	-				-0.9
3,730,072	-				+0.4
3,730,077	+				+1.1
3,730,077	+				-1.3
3,730,078	-				-1.2
3,730,078	-				-1.9
3,730,140	+				-0.1
3,730,140	+				+0.8
3,730,140	+				-1.3
3,730,140	+				+1.1
3,730,141	-				+0.0
3,730,141	-				-0.4
3,730,141	-				+3.1
3,730,141	-				-0.2