Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001146

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,269,165	-		ABIE53_001145	0.78	-0.7
1,269,181	+		ABIE53_001145	0.80	-2.7
1,269,181	+		ABIE53_001145	0.80	-0.3
1,269,181	+		ABIE53_001145	0.80	-2.0
1,269,181	+		ABIE53_001145	0.80	-0.5
1,269,206	+		ABIE53_001145	0.83	-0.6
1,269,207	-		ABIE53_001145	0.83	-0.5
1,269,222	+		ABIE53_001145	0.85	+0.3
1,269,222	+		ABIE53_001145	0.85	-0.7
1,269,222	+		ABIE53_001145	0.85	-1.1
1,269,222	+		ABIE53_001145	0.85	-2.0
1,269,223	+		ABIE53_001145	0.85	-1.4
1,269,223	-		ABIE53_001145	0.85	-0.4
1,269,223	-		ABIE53_001145	0.85	-2.4
1,269,223	-		ABIE53_001145	0.85	+0.3
1,269,223	-		ABIE53_001145	0.85	-0.3
1,269,223	-		ABIE53_001145	0.85	-0.3
1,269,231	+		ABIE53_001145	0.86	-2.5
1,269,231	+		ABIE53_001145	0.86	-0.5
1,269,231	+		ABIE53_001145	0.86	-1.3
1,269,232	-		ABIE53_001145	0.86	-1.3
1,269,232	-		ABIE53_001145	0.86	-1.1
1,269,244	+		ABIE53_001145	0.88	-0.1
1,269,244	+		ABIE53_001145	0.88	-4.1
1,269,244	+		ABIE53_001145	0.88	-0.7
1,269,316	+				-0.4
1,269,317	-				+3.1
1,269,317	-				-0.7
1,269,317	-				+0.2
1,269,317	-				-0.1
1,269,338	+				-2.0
1,269,338	+				-2.4
1,269,338	+				-1.9
1,269,339	-				-1.2
1,269,339	-				-1.2
1,269,344	+				-1.2
1,269,344	+				-1.8
1,269,344	+				-2.3
1,269,344	+				-2.1
1,269,344	+				-1.3
1,269,344	+				-2.1
1,269,344	+				-1.4
1,269,344	+				-0.6
1,269,344	+				-3.0
1,269,344	+				-0.4
1,269,344	+				-2.4
1,269,345	-				-0.3
1,269,345	-				-0.5
1,269,345	-				-0.0
1,269,345	-				-2.5
1,269,345	-				-0.2
1,269,345	-				-0.5
1,269,345	-				-1.1
1,269,345	-				+0.5
1,269,345	-				-1.9
1,269,345	-				-1.2
1,269,345	-				-0.9
1,269,345	-				-0.9
1,269,345	-				+0.3
1,269,345	-				-0.9
1,269,345	-				+1.5
1,269,345	-				-0.3
1,269,345	-				-0.4
1,269,345	-				+0.2
1,269,364	+				-1.5
1,269,364	+				-1.1
1,269,365	-				-0.3
1,269,365	-				+0.1
1,269,382	+				-2.1
1,269,382	+				-0.7
1,269,382	+				-0.0
1,269,382	+				-0.4
1,269,383	-				+1.9
1,269,500	+				-1.6
1,269,500	+				-2.3
1,269,500	+				-0.1
1,269,500	+				-1.3
1,269,500	+				+0.3
1,269,500	+				+0.2
1,269,500	+				+0.8
1,269,500	+				-0.7
1,269,500	+				-1.8
1,269,500	+				+0.7
1,269,500	+				-0.7
1,269,500	+				-0.7
1,269,500	+				-1.2
1,269,500	+				+0.2
1,269,500	+				-0.1
1,269,501	-				+2.5
1,269,501	-				+1.3
1,269,501	-				-1.0
1,269,501	-				-0.6
1,269,501	-				+1.2
1,269,501	-				-0.5
1,269,501	-				+0.7
1,269,501	-				+1.1
1,269,501	-				-0.4
1,269,501	-				-1.3
1,269,501	-				-1.3
1,269,501	-				-0.9
1,269,501	-				-0.5
1,269,501	-				-0.1
1,269,501	-				-1.2
1,269,501	-				+0.1
1,269,501	-				+0.4
1,269,501	-				-1.6
1,269,501	-				-1.3
1,269,501	-				+0.5
1,269,501	-				+0.0
1,269,501	-				-1.1
1,269,501	-				-0.4
1,269,501	-				-0.6
1,269,501	-				-1.4
1,269,501	-				+0.7
1,269,502	+				-2.1
1,269,502	+				-1.1
1,269,502	+				-0.2
1,269,502	+				-1.6
1,269,503	-				-0.1
1,269,503	-				+0.8
1,269,503	-				+0.2
1,269,503	-				+0.5
1,269,576	+				-1.2
1,269,577	-				-0.7
1,269,577	-				+0.2
1,269,585	+				-0.6
1,269,585	+				+0.3
1,269,585	+				+0.5
1,269,586	-				+0.6
1,269,594	-				-0.5
1,269,661	+				+0.1
1,269,677	+				+0.2
1,269,677	+				-0.7
1,269,677	+				-0.3
1,269,677	+				-0.4
1,269,677	+				-0.8
1,269,677	+				+1.1
1,269,678	-				-0.7
1,269,678	-				-0.5
1,269,678	-				-0.0
1,269,678	-				-1.5
1,269,678	-				-1.3
1,269,678	-				-0.8
1,269,678	-				+0.4
1,269,700	-				+0.1
1,269,704	+				+0.9
1,269,728	+				+0.9
1,269,729	-				+0.1
1,269,741	+				-0.3
1,269,768	+				-1.7
1,269,769	-				-0.7
1,269,769	-				+1.0
1,269,814	+				-1.0
1,269,814	+				+0.7
1,269,815	-				-0.1
1,269,840	+				-1.1
1,269,840	+				-0.3
1,269,840	+				+0.0
1,269,840	+				-0.7
1,269,840	+				-0.1
1,269,840	+				+0.8
1,269,840	+				-1.2
1,269,840	+				-0.2
1,269,840	+				-1.1
1,269,840	+				-0.5
1,269,840	+				+0.5
1,269,840	+				+3.1
1,269,840	+				+1.5
1,269,840	+				+0.1
1,269,840	+				-0.5
1,269,841	-				-1.3
1,269,841	-				-1.1
1,269,841	-				-1.2
1,269,841	-				-1.5
1,269,841	-				+0.5
1,269,841	-				-1.5
1,269,841	-				+1.3
1,269,841	-				-1.4
1,269,841	-				+0.1
1,269,879	+				+1.0
1,269,880	-				-0.5
1,269,880	-				+2.1
1,269,880	-				-0.5
1,269,880	-				+0.1
1,269,895	+				+0.1
1,269,895	+				-0.4
1,269,895	+				+0.5
1,269,896	-				-0.2
1,269,896	-				-0.4
1,269,896	-				-0.8
1,269,932	+				-1.2
1,269,932	+				-1.1
1,269,932	+				+0.1
1,269,933	-				-0.3
1,269,933	-				+0.6
1,269,933	-				-0.7
1,270,159	-		ABIE53_001146	0.23	+0.3
1,270,204	+		ABIE53_001146	0.26	-0.6
1,270,204	+		ABIE53_001146	0.26	+0.1
1,270,204	-		ABIE53_001146	0.26	+1.5
1,270,205	-		ABIE53_001146	0.26	-1.0
1,270,205	-		ABIE53_001146	0.26	-0.6
1,270,205	-		ABIE53_001146	0.26	-1.7
1,270,205	-		ABIE53_001146	0.26	-0.8
1,270,205	-		ABIE53_001146	0.26	-1.5
1,270,205	-		ABIE53_001146	0.26	-0.9
1,270,225	+		ABIE53_001146	0.28	-0.2
1,270,226	-		ABIE53_001146	0.28	-0.8
1,270,226	-		ABIE53_001146	0.28	-1.3
1,270,226	-		ABIE53_001146	0.28	+1.7
1,270,243	+		ABIE53_001146	0.29	-0.7
1,270,243	+		ABIE53_001146	0.29	-1.0
1,270,244	-		ABIE53_001146	0.29	+0.5
1,270,276	+		ABIE53_001146	0.32	-1.8
1,270,276	+		ABIE53_001146	0.32	-0.1
1,270,276	+		ABIE53_001146	0.32	-0.3
1,270,277	-		ABIE53_001146	0.32	-0.8
1,270,284	+		ABIE53_001146	0.32	-0.5
1,270,284	+		ABIE53_001146	0.32	-0.5
1,270,285	-		ABIE53_001146	0.32	+0.3
1,270,285	-		ABIE53_001146	0.32	+0.6
1,270,285	-		ABIE53_001146	0.32	-1.2
1,270,285	-		ABIE53_001146	0.32	-0.4
1,270,336	+		ABIE53_001146	0.36	-0.3
1,270,337	-		ABIE53_001146	0.36	-0.8
1,270,337	-		ABIE53_001146	0.36	-1.4
1,270,542	+		ABIE53_001146	0.51	-0.1
1,270,542	+		ABIE53_001146	0.51	-1.7
1,270,604	-		ABIE53_001146	0.56	-0.5
1,270,604	-		ABIE53_001146	0.56	-0.5
1,270,618	+		ABIE53_001146	0.57	-0.5
1,270,619	-		ABIE53_001146	0.57	-0.3
1,270,619	-		ABIE53_001146	0.57	-0.5
1,270,788	+		ABIE53_001146	0.69	-2.5
1,270,965	+		ABIE53_001146	0.82	-0.6
1,270,998	+		ABIE53_001146	0.84	-1.5
1,270,999	-		ABIE53_001146	0.84	-0.3
1,270,999	-		ABIE53_001146	0.84	-1.0
1,271,092	+				-2.4
1,271,092	+				+0.5
1,271,092	+				+0.3
1,271,092	+				-1.2
1,271,093	-				-0.3
1,271,093	-				-0.3
1,271,093	-				-0.4
1,271,093	-				-1.1
1,271,093	-				-0.5
1,271,226	+				+0.5
1,271,226	+				-0.7
1,271,227	-				-1.7
1,271,269	+				+0.5
1,271,270	-				-0.4
1,271,298	+				-0.4
1,271,298	+				+0.0
1,271,298	+				-1.1
1,271,298	+				+1.1
1,271,299	-				-0.7
1,271,299	-				-0.6
1,271,299	-				-0.9
1,271,299	-				-1.1
1,271,311	-				-0.6
1,271,327	+				-0.4
1,271,327	+				+1.5
1,271,327	+				+0.3
1,271,328	-				+0.6
1,271,328	-				-0.3
1,271,328	-				-3.1
1,271,342	+				-1.6
1,271,343	-				+0.0
1,271,343	-				+0.8
1,271,343	-				-0.6
1,271,385	-				-0.9
1,271,397	+				-0.1
1,271,398	-				-0.8
1,271,398	-				-0.7
1,271,398	-				-1.1
1,271,398	-				-0.3
1,271,420	+				-0.7
1,271,420	+				+0.3
1,271,420	+				-0.4
1,271,420	+				-0.1
1,271,420	+				+0.2
1,271,420	+				-0.5
1,271,420	+				-1.0
1,271,420	+				+0.3
1,271,421	-				+0.6
1,271,421	-				-0.3
1,271,421	-				+0.2
1,271,436	+				-1.8
1,271,436	+				-1.7
1,271,436	+				+1.0
1,271,436	+				-0.9
1,271,436	+				-0.0
1,271,436	+				-0.0
1,271,436	+				-0.8
1,271,436	+				-1.0
1,271,436	+				+1.1
1,271,437	-				+0.9
1,271,437	-				-0.5
1,271,437	-				-0.9
1,271,437	-				+0.1
1,271,437	-				+0.3
1,271,445	+				-2.1
1,271,445	+				+0.7
1,271,445	+				+0.1
1,271,445	+				+0.4
1,271,445	+				-1.4
1,271,446	-				+0.9
1,271,446	-				-1.0
1,271,446	-				-1.2
1,271,446	-				+1.2
1,271,596	-				-1.0
1,271,767	+		ABIE53_001147	0.13	-0.2
1,271,767	+		ABIE53_001147	0.13	-1.3
1,271,767	+		ABIE53_001147	0.13	-1.1
1,271,767	+		ABIE53_001147	0.13	-2.0
1,271,768	-		ABIE53_001147	0.13	-0.9
1,271,768	-		ABIE53_001147	0.13	-0.7
1,271,768	-		ABIE53_001147	0.13	+2.5
1,271,790	+		ABIE53_001147	0.14	-0.9
1,271,790	+		ABIE53_001147	0.14	-0.3
1,271,820	+		ABIE53_001147	0.15	-0.6
1,271,820	+		ABIE53_001147	0.15	+0.5
1,271,820	+		ABIE53_001147	0.15	+0.0
1,271,820	+		ABIE53_001147	0.15	+0.6
1,271,820	+		ABIE53_001147	0.15	-1.1
1,271,820	+		ABIE53_001147	0.15	-1.3
1,271,820	+		ABIE53_001147	0.15	-2.5
1,271,820	+		ABIE53_001147	0.15	-0.1
1,271,820	+		ABIE53_001147	0.15	-0.7
1,271,820	+		ABIE53_001147	0.15	+1.1
1,271,820	+		ABIE53_001147	0.15	-0.0
1,271,820	+		ABIE53_001147	0.15	-0.1
1,271,821	-		ABIE53_001147	0.15	+1.6
1,271,821	-		ABIE53_001147	0.15	+1.0
1,271,821	-		ABIE53_001147	0.15	+1.5
1,271,892	+		ABIE53_001147	0.17	-0.8
1,271,893	-		ABIE53_001147	0.17	-1.5
1,271,961	+		ABIE53_001147	0.19	+1.7
1,271,961	+		ABIE53_001147	0.19	-0.7
1,271,961	+		ABIE53_001147	0.19	-1.8
1,271,962	-		ABIE53_001147	0.19	-0.0
1,271,980	+		ABIE53_001147	0.19	-0.7
1,271,980	+		ABIE53_001147	0.19	-0.9
1,271,980	+		ABIE53_001147	0.19	-0.4
1,271,981	-		ABIE53_001147	0.20	+1.1
1,271,981	-		ABIE53_001147	0.20	+0.3
1,271,981	-		ABIE53_001147	0.20	-0.3
1,271,988	+		ABIE53_001147	0.20	+1.5
1,271,989	-		ABIE53_001147	0.20	+1.1
1,272,022	-		ABIE53_001147	0.21	+2.1
1,272,102	+		ABIE53_001147	0.23	-1.0
1,272,103	-		ABIE53_001147	0.23	-0.2
1,272,214	+		ABIE53_001147	0.26	+0.3
1,272,214	+		ABIE53_001147	0.26	+0.5
1,272,214	+		ABIE53_001147	0.26	-0.9