Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02311 and SMc02312 are separated by 4 nucleotides SMc02312 and SMc02207 are separated by 239 nucleotides SMc02207 and SMc04431 are separated by 268 nucleotides SMc04431 and SMc04432 overlap by 4 nucleotides SMc04432 and SMc02313 are separated by 202 nucleotides
SMc02311: SMc02311 - Maf-like protein, at 682,637 to 683,257
SMc02311
SMc02312: SMc02312 - zinc-binding protein, at 683,262 to 683,474
SMc02312
SMc02207: SMc02207 - tRNA-Phe, at 683,714 to 683,789
SMc02207
SMc04431: SMc04431 - hypothetical protein, at 684,058 to 684,321
SMc04431
SMc04432: SMc04432 - hypothetical protein, at 684,318 to 684,635
SMc04432
SMc02313: SMc02313 - hypothetical protein, at 684,838 to 685,194
SMc02313
Position (kb) 684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.358 kb on + strand, within SMc02312 at 683.359 kb on - strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.419 kb on - strand, within SMc02312 at 683.500 kb on + strand at 683.500 kb on + strand at 683.500 kb on + strand at 683.791 kb on + strand at 683.792 kb on - strand at 683.870 kb on - strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.999 kb on - strand at 684.009 kb on + strand at 684.010 kb on - strand at 684.015 kb on - strand at 684.053 kb on - strand at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.266 kb on + strand, within SMc04431 at 684.324 kb on - strand at 684.368 kb on + strand, within SMc04432 at 684.369 kb on - strand, within SMc04432 at 684.422 kb on + strand, within SMc04432 at 684.423 kb on - strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.474 kb on - strand, within SMc04432 at 684.629 kb on + strand at 684.629 kb on + strand at 684.630 kb on - strand at 684.630 kb on - strand at 684.632 kb on - strand at 684.633 kb on + strand at 684.667 kb on - strand at 684.672 kb on - strand at 684.718 kb on + strand at 684.739 kb on + strand at 684.740 kb on - strand at 684.856 kb on - strand at 684.856 kb on - strand at 684.856 kb on - strand at 684.860 kb on - strand at 684.896 kb on - strand, within SMc02313 at 685.018 kb on - strand, within SMc02313 at 685.319 kb on + strand at 685.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 683,358 + SMc02312 0.45 +1.0 683,359 - SMc02312 0.46 +0.7 683,418 + SMc02312 0.73 +0.0 683,418 + SMc02312 0.73 -1.6 683,418 + SMc02312 0.73 -0.0 683,419 - SMc02312 0.74 -1.2 683,500 + +0.0 683,500 + -0.2 683,500 + +0.3 683,791 + -1.0 683,792 - +0.1 683,870 - -0.1 683,998 + -0.2 683,998 + -0.6 683,998 + -0.5 683,999 - +0.5 684,009 + +0.1 684,010 - -1.2 684,015 - -0.2 684,053 - +0.7 684,128 + SMc04431 0.27 +0.9 684,128 + SMc04431 0.27 -3.4 684,128 + SMc04431 0.27 +0.8 684,129 - SMc04431 0.27 -0.9 684,129 - SMc04431 0.27 -1.6 684,129 - SMc04431 0.27 +0.6 684,129 - SMc04431 0.27 +0.5 684,129 - SMc04431 0.27 -0.1 684,129 - SMc04431 0.27 -0.2 684,178 - SMc04431 0.45 +0.5 684,178 - SMc04431 0.45 +0.7 684,178 - SMc04431 0.45 +0.3 684,265 - SMc04431 0.78 -0.4 684,265 - SMc04431 0.78 +0.7 684,266 + SMc04431 0.79 -0.6 684,324 - +0.2 684,368 + SMc04432 0.16 +0.2 684,369 - SMc04432 0.16 +0.5 684,422 + SMc04432 0.33 +0.3 684,423 - SMc04432 0.33 +0.4 684,473 + SMc04432 0.49 -0.2 684,473 + SMc04432 0.49 -1.3 684,474 - SMc04432 0.49 +0.6 684,629 + -0.7 684,629 + +1.3 684,630 - +1.5 684,630 - +0.8 684,632 - -0.6 684,633 + +1.1 684,667 - -0.1 684,672 - +0.5 684,718 + -2.1 684,739 + -0.6 684,740 - -0.3 684,856 - +0.3 684,856 - +0.1 684,856 - -0.6 684,860 - -0.5 684,896 - SMc02313 0.16 +0.7 685,018 - SMc02313 0.50 +0.5 685,319 + +1.9 685,320 - -0.7
Or see this region's nucleotide sequence