Strain Fitness in Sinorhizobium meliloti 1021 around SMc04235

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04234 and SMc04235 are separated by 127 nucleotidesSMc04235 and SMc04236 are separated by 446 nucleotides SMc04234: SMc04234 - cold shock-like transcription regulator protein, at 2,061,342 to 2,061,554 SMc04234 SMc04235: SMc04235 - tRNA-dihydrouridine synthase A, at 2,061,682 to 2,062,761 SMc04235 SMc04236: SMc04236 - glycine-rich cell wall structural transmembrane protein, at 2,063,208 to 2,063,960 SMc04236 Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -1 0 1 2 3 4at 2060.791 kb on - strandat 2060.812 kb on + strandat 2060.893 kb on + strandat 2060.894 kb on - strandat 2060.909 kb on - strandat 2061.016 kb on + strandat 2061.016 kb on + strandat 2061.683 kb on + strandat 2061.683 kb on + strandat 2061.683 kb on + strandat 2061.784 kb on + strandat 2061.784 kb on + strandat 2061.785 kb on - strandat 2061.785 kb on - strandat 2061.794 kb on + strand, within SMc04235at 2061.874 kb on - strand, within SMc04235at 2061.887 kb on + strand, within SMc04235at 2061.887 kb on + strand, within SMc04235at 2061.936 kb on + strand, within SMc04235at 2061.936 kb on + strand, within SMc04235at 2061.936 kb on + strand, within SMc04235at 2061.937 kb on - strand, within SMc04235at 2062.007 kb on + strand, within SMc04235at 2062.360 kb on + strand, within SMc04235at 2062.360 kb on + strand, within SMc04235at 2062.361 kb on - strand, within SMc04235at 2062.695 kb on - strandat 2062.892 kb on + strandat 2062.918 kb on + strandat 2062.919 kb on - strandat 2063.121 kb on + strandat 2063.182 kb on + strandat 2063.182 kb on + strandat 2063.214 kb on - strandat 2063.257 kb on - strandat 2063.284 kb on + strand, within SMc04236at 2063.316 kb on - strand, within SMc04236at 2063.439 kb on - strand, within SMc04236

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,060,791 - -0.3
2,060,812 + -0.2
2,060,893 + +1.0
2,060,894 - +0.5
2,060,909 - -1.4
2,061,016 + -0.8
2,061,016 + -0.3
2,061,683 + +0.3
2,061,683 + +0.5
2,061,683 + +0.0
2,061,784 + +2.7
2,061,784 + +2.8
2,061,785 - +1.7
2,061,785 - +1.6
2,061,794 + SMc04235 0.10 +3.0
2,061,874 - SMc04235 0.18 +2.0
2,061,887 + SMc04235 0.19 +2.8
2,061,887 + SMc04235 0.19 +2.7
2,061,936 + SMc04235 0.24 +3.2
2,061,936 + SMc04235 0.24 +1.8
2,061,936 + SMc04235 0.24 +0.7
2,061,937 - SMc04235 0.24 +2.2
2,062,007 + SMc04235 0.30 +2.1
2,062,360 + SMc04235 0.63 +2.3
2,062,360 + SMc04235 0.63 +2.4
2,062,361 - SMc04235 0.63 +2.4
2,062,695 - +2.0
2,062,892 + -1.5
2,062,918 + +3.9
2,062,919 - -1.3
2,063,121 + +0.9
2,063,182 + +0.6
2,063,182 + +0.9
2,063,214 - +2.0
2,063,257 - +0.1
2,063,284 + SMc04236 0.10 -0.7
2,063,316 - SMc04236 0.14 +0.5
2,063,439 - SMc04236 0.31 -1.3

Or see this region's nucleotide sequence