Strain Fitness in Sinorhizobium meliloti 1021 around SMc04141

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04142 and SMc04141 are separated by 20 nucleotidesSMc04141 and SMc04140 overlap by 4 nucleotides SMc04142: SMc04142 - hypothetical protein, at 129,937 to 130,821 SMc04142 SMc04141: SMc04141 - glutathione S-transferase, at 130,842 to 131,483 SMc04141 SMc04140: SMc04140 - ABC transporter ATP-binding protein, at 131,480 to 132,562 SMc04140 Position (kb) 130 131 132Strain fitness (log2 ratio) -1 0 1at 129.882 kb on + strandat 129.895 kb on - strandat 131.082 kb on - strand, within SMc04141at 131.138 kb on - strand, within SMc04141at 131.470 kb on + strandat 131.471 kb on - strandat 131.896 kb on - strand, within SMc04140at 131.896 kb on - strand, within SMc04140at 131.994 kb on + strand, within SMc04140at 131.994 kb on + strand, within SMc04140at 131.994 kb on + strand, within SMc04140at 132.310 kb on - strand, within SMc04140at 132.310 kb on - strand, within SMc04140at 132.483 kb on - strandat 132.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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129,882 + +0.8
129,895 - +0.2
131,082 - SMc04141 0.37 +0.2
131,138 - SMc04141 0.46 -0.6
131,470 + +0.6
131,471 - +0.2
131,896 - SMc04140 0.38 -0.4
131,896 - SMc04140 0.38 +0.0
131,994 + SMc04140 0.47 -0.1
131,994 + SMc04140 0.47 -0.8
131,994 + SMc04140 0.47 +1.2
132,310 - SMc04140 0.77 +0.7
132,310 - SMc04140 0.77 -0.0
132,483 - +0.1
132,483 - -0.8

Or see this region's nucleotide sequence