Strain Fitness in Sinorhizobium meliloti 1021 around SMc04006

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04005 and SMc04006 overlap by 1 nucleotidesSMc04006 and SMc04007 are separated by 229 nucleotides SMc04005: SMc04005 - pyruvate kinase, at 3,000,009 to 3,001,448 SMc04005 SMc04006: SMc04006 - hypothetical protein, at 3,001,448 to 3,001,885 SMc04006 SMc04007: SMc04007 - hypothetical protein, at 3,002,115 to 3,002,909 SMc04007 Position (kb) 3001 3002Strain fitness (log2 ratio) -1 0 1at 3000.496 kb on + strand, within SMc04005at 3000.557 kb on + strand, within SMc04005at 3000.959 kb on + strand, within SMc04005at 3000.959 kb on + strand, within SMc04005at 3001.126 kb on + strand, within SMc04005at 3002.038 kb on + strandat 3002.039 kb on - strandat 3002.092 kb on - strandat 3002.124 kb on + strandat 3002.125 kb on - strandat 3002.133 kb on + strandat 3002.134 kb on - strandat 3002.211 kb on + strand, within SMc04007at 3002.211 kb on + strand, within SMc04007at 3002.260 kb on - strand, within SMc04007at 3002.264 kb on + strand, within SMc04007at 3002.456 kb on - strand, within SMc04007at 3002.475 kb on + strand, within SMc04007at 3002.476 kb on - strand, within SMc04007at 3002.488 kb on + strand, within SMc04007at 3002.691 kb on + strand, within SMc04007at 3002.692 kb on - strand, within SMc04007at 3002.715 kb on - strand, within SMc04007at 3002.721 kb on + strand, within SMc04007at 3002.722 kb on - strand, within SMc04007at 3002.722 kb on - strand, within SMc04007at 3002.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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3,000,496 + SMc04005 0.34 +1.3
3,000,557 + SMc04005 0.38 +0.6
3,000,959 + SMc04005 0.66 +0.1
3,000,959 + SMc04005 0.66 +1.3
3,001,126 + SMc04005 0.78 +0.6
3,002,038 + -0.1
3,002,039 - +0.2
3,002,092 - +0.8
3,002,124 + -0.4
3,002,125 - -1.1
3,002,133 + +0.0
3,002,134 - +0.3
3,002,211 + SMc04007 0.12 -0.9
3,002,211 + SMc04007 0.12 +0.0
3,002,260 - SMc04007 0.18 +0.5
3,002,264 + SMc04007 0.19 -0.5
3,002,456 - SMc04007 0.43 +0.8
3,002,475 + SMc04007 0.45 +0.6
3,002,476 - SMc04007 0.45 -0.7
3,002,488 + SMc04007 0.47 -0.2
3,002,691 + SMc04007 0.72 -1.7
3,002,692 - SMc04007 0.73 +0.4
3,002,715 - SMc04007 0.75 +0.3
3,002,721 + SMc04007 0.76 -0.3
3,002,722 - SMc04007 0.76 +0.3
3,002,722 - SMc04007 0.76 +1.2
3,002,868 + -0.9

Or see this region's nucleotide sequence