Strain Fitness in Sinorhizobium meliloti 1021 around SMc03931

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03929 and SMc03930 are separated by 195 nucleotidesSMc03930 and SMc03931 overlap by 8 nucleotidesSMc03931 and SMc03932 overlap by 4 nucleotidesSMc03932 and SMc03933 are separated by 114 nucleotides SMc03929: SMc03929 - zinc-type alcohol dehydrogenase transmembrane protein, at 3,078,322 to 3,079,497 SMc03929 SMc03930: SMc03930 - sarcosine oxidase subunit gamma, at 3,079,693 to 3,080,247 SMc03930 SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233 SMc03931 SMc03932: SMc03932 - sarcosine oxidase subunit delta, at 3,083,230 to 3,083,571 SMc03932 SMc03933: SMc03933 - sarcosine oxidase subunit B protein, at 3,083,686 to 3,084,939 SMc03933 Position (kb) 3080 3081 3082 3083 3084Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3079.390 kb on - strandat 3079.397 kb on + strandat 3079.398 kb on - strandat 3079.398 kb on - strandat 3079.590 kb on + strandat 3079.590 kb on + strandat 3079.590 kb on + strandat 3079.593 kb on + strandat 3079.593 kb on + strandat 3079.776 kb on + strand, within SMc03930at 3080.325 kb on + strandat 3080.326 kb on - strandat 3080.326 kb on - strandat 3080.326 kb on - strandat 3080.403 kb on + strandat 3080.403 kb on + strandat 3080.641 kb on + strand, within SMc03931at 3080.662 kb on - strand, within SMc03931at 3080.864 kb on - strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.013 kb on - strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.184 kb on - strand, within SMc03931at 3081.184 kb on - strand, within SMc03931at 3081.184 kb on - strand, within SMc03931at 3081.308 kb on - strand, within SMc03931at 3081.328 kb on - strand, within SMc03931at 3081.469 kb on + strand, within SMc03931at 3081.469 kb on + strand, within SMc03931at 3081.470 kb on - strand, within SMc03931at 3081.472 kb on - strand, within SMc03931at 3081.472 kb on - strand, within SMc03931at 3081.697 kb on + strand, within SMc03931at 3081.897 kb on + strand, within SMc03931at 3081.897 kb on + strand, within SMc03931at 3081.897 kb on + strand, within SMc03931at 3081.898 kb on - strand, within SMc03931at 3082.240 kb on + strand, within SMc03931at 3082.240 kb on + strand, within SMc03931at 3082.241 kb on - strand, within SMc03931at 3082.242 kb on + strand, within SMc03931at 3082.242 kb on + strand, within SMc03931at 3082.242 kb on + strand, within SMc03931at 3082.243 kb on - strand, within SMc03931at 3082.243 kb on - strand, within SMc03931at 3082.243 kb on - strand, within SMc03931at 3082.287 kb on + strand, within SMc03931at 3082.287 kb on + strand, within SMc03931at 3082.288 kb on - strand, within SMc03931at 3082.482 kb on + strand, within SMc03931at 3082.482 kb on + strand, within SMc03931at 3082.482 kb on + strand, within SMc03931at 3082.483 kb on - strand, within SMc03931at 3082.602 kb on + strand, within SMc03931at 3082.603 kb on - strand, within SMc03931at 3082.732 kb on - strand, within SMc03931at 3082.744 kb on - strand, within SMc03931at 3082.809 kb on + strand, within SMc03931at 3082.809 kb on + strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.854 kb on + strand, within SMc03931at 3082.855 kb on - strand, within SMc03931at 3082.855 kb on - strand, within SMc03931at 3083.074 kb on - strandat 3083.259 kb on - strandat 3083.324 kb on + strand, within SMc03932at 3083.325 kb on - strand, within SMc03932at 3083.325 kb on - strand, within SMc03932at 3083.445 kb on - strand, within SMc03932at 3083.496 kb on + strand, within SMc03932at 3083.496 kb on + strand, within SMc03932at 3083.550 kb on - strandat 3083.627 kb on + strandat 3083.627 kb on + strandat 3083.627 kb on + strandat 3083.628 kb on - strandat 3083.628 kb on - strandat 3083.649 kb on - strandat 3083.687 kb on + strandat 3083.687 kb on + strandat 3083.687 kb on + strandat 3083.688 kb on - strandat 3083.991 kb on + strand, within SMc03933at 3083.991 kb on + strand, within SMc03933at 3083.992 kb on - strand, within SMc03933at 3083.992 kb on - strand, within SMc03933at 3084.027 kb on - strand, within SMc03933at 3084.035 kb on + strand, within SMc03933at 3084.036 kb on - strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
3,079,390 - -0.1
3,079,397 + +1.1
3,079,398 - +0.9
3,079,398 - -0.0
3,079,590 + -2.1
3,079,590 + -0.6
3,079,590 + +0.5
3,079,593 + +1.2
3,079,593 + +0.2
3,079,776 + SMc03930 0.15 +2.6
3,080,325 + +3.0
3,080,326 - -0.7
3,080,326 - +2.4
3,080,326 - +2.0
3,080,403 + +2.1
3,080,403 + +3.2
3,080,641 + SMc03931 0.13 +0.2
3,080,662 - SMc03931 0.14 +2.2
3,080,864 - SMc03931 0.21 +2.1
3,081,012 + SMc03931 0.26 +2.3
3,081,012 + SMc03931 0.26 +2.0
3,081,012 + SMc03931 0.26 +2.8
3,081,013 - SMc03931 0.26 +3.1
3,081,183 + SMc03931 0.31 +2.6
3,081,183 + SMc03931 0.31 +2.0
3,081,183 + SMc03931 0.31 +2.6
3,081,184 - SMc03931 0.32 +2.1
3,081,184 - SMc03931 0.32 +3.3
3,081,184 - SMc03931 0.32 +2.0
3,081,308 - SMc03931 0.36 +1.8
3,081,328 - SMc03931 0.36 +2.2
3,081,469 + SMc03931 0.41 +2.0
3,081,469 + SMc03931 0.41 +3.2
3,081,470 - SMc03931 0.41 +1.1
3,081,472 - SMc03931 0.41 +2.0
3,081,472 - SMc03931 0.41 +2.1
3,081,697 + SMc03931 0.49 +1.6
3,081,897 + SMc03931 0.55 +2.2
3,081,897 + SMc03931 0.55 +1.4
3,081,897 + SMc03931 0.55 +2.1
3,081,898 - SMc03931 0.55 +2.3
3,082,240 + SMc03931 0.67 +2.3
3,082,240 + SMc03931 0.67 +2.6
3,082,241 - SMc03931 0.67 -0.4
3,082,242 + SMc03931 0.67 +2.4
3,082,242 + SMc03931 0.67 +2.6
3,082,242 + SMc03931 0.67 +1.2
3,082,243 - SMc03931 0.67 +2.3
3,082,243 - SMc03931 0.67 +1.6
3,082,243 - SMc03931 0.67 +2.7
3,082,287 + SMc03931 0.68 +2.3
3,082,287 + SMc03931 0.68 +0.9
3,082,288 - SMc03931 0.68 +1.9
3,082,482 + SMc03931 0.75 +0.3
3,082,482 + SMc03931 0.75 +2.8
3,082,482 + SMc03931 0.75 +2.4
3,082,483 - SMc03931 0.75 +2.6
3,082,602 + SMc03931 0.79 +2.9
3,082,603 - SMc03931 0.79 +2.5
3,082,732 - SMc03931 0.83 +2.5
3,082,744 - SMc03931 0.84 +1.8
3,082,809 + SMc03931 0.86 +0.7
3,082,809 + SMc03931 0.86 +2.4
3,082,810 - SMc03931 0.86 +2.0
3,082,810 - SMc03931 0.86 +2.5
3,082,810 - SMc03931 0.86 +1.9
3,082,810 - SMc03931 0.86 +2.0
3,082,851 + SMc03931 0.87 +2.5
3,082,851 + SMc03931 0.87 +0.8
3,082,851 + SMc03931 0.87 +2.3
3,082,854 + SMc03931 0.87 -0.5
3,082,855 - SMc03931 0.87 +0.7
3,082,855 - SMc03931 0.87 +2.1
3,083,074 - +0.7
3,083,259 - +5.5
3,083,324 + SMc03932 0.27 +2.4
3,083,325 - SMc03932 0.28 +0.5
3,083,325 - SMc03932 0.28 +1.8
3,083,445 - SMc03932 0.63 +1.9
3,083,496 + SMc03932 0.78 +2.3
3,083,496 + SMc03932 0.78 +2.9
3,083,550 - +2.7
3,083,627 + +2.3
3,083,627 + +1.7
3,083,627 + +2.4
3,083,628 - +1.8
3,083,628 - +1.8
3,083,649 - +0.6
3,083,687 + -0.9
3,083,687 + +2.6
3,083,687 + +3.3
3,083,688 - +0.3
3,083,991 + SMc03933 0.24 +2.5
3,083,991 + SMc03933 0.24 +3.6
3,083,992 - SMc03933 0.24 +3.2
3,083,992 - SMc03933 0.24 +1.8
3,084,027 - SMc03933 0.27 +2.6
3,084,035 + SMc03933 0.28 -0.0
3,084,036 - SMc03933 0.28 +0.9
3,084,087 + SMc03933 0.32 +2.3
3,084,087 + SMc03933 0.32 +2.5
3,084,087 + SMc03933 0.32 +2.0
3,084,087 + SMc03933 0.32 +2.4
3,084,089 + SMc03933 0.32 +2.7
3,084,089 + SMc03933 0.32 +2.9
3,084,089 + SMc03933 0.32 +2.6
3,084,090 - SMc03933 0.32 +2.4
3,084,090 - SMc03933 0.32 +3.3
3,084,090 - SMc03933 0.32 +2.7
3,084,090 - SMc03933 0.32 +2.6
3,084,090 - SMc03933 0.32 +2.8
3,084,090 - SMc03933 0.32 +2.6

Or see this region's nucleotide sequence