Strain Fitness in Sinorhizobium meliloti 1021 around SMc03885

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03884 and SMc03885 are separated by 4 nucleotidesSMc03885 and SMc03886 are separated by 232 nucleotides SMc03884: SMc03884 - geranyltranstransferase, at 3,550,625 to 3,551,539 SMc03884 SMc03885: SMc03885 - histidinol-phosphate aminotransferase, at 3,551,544 to 3,552,599 SMc03885 SMc03886: SMc03886 - transposase, at 3,552,832 to 3,553,908 SMc03886 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -2 -1 0 1at 3550.624 kb on + strandat 3551.586 kb on + strandat 3551.586 kb on + strandat 3551.855 kb on - strand, within SMc03885at 3551.884 kb on - strand, within SMc03885at 3551.893 kb on - strand, within SMc03885at 3551.893 kb on - strand, within SMc03885at 3551.893 kb on - strand, within SMc03885at 3552.093 kb on + strand, within SMc03885at 3552.093 kb on + strand, within SMc03885at 3552.093 kb on + strand, within SMc03885at 3552.093 kb on + strand, within SMc03885at 3552.094 kb on - strand, within SMc03885at 3552.094 kb on - strand, within SMc03885at 3552.094 kb on - strand, within SMc03885at 3552.095 kb on + strand, within SMc03885at 3552.139 kb on - strand, within SMc03885at 3552.685 kb on + strandat 3552.685 kb on + strandat 3552.685 kb on + strandat 3552.686 kb on - strandat 3552.686 kb on - strandat 3552.686 kb on - strandat 3552.686 kb on - strandat 3552.691 kb on + strandat 3552.691 kb on + strandat 3552.691 kb on + strandat 3552.692 kb on - strandat 3552.692 kb on - strandat 3552.726 kb on - strandat 3552.807 kb on - strandat 3552.808 kb on + strandat 3552.808 kb on + strandat 3552.808 kb on + strandat 3552.808 kb on + strandat 3552.809 kb on - strandat 3552.809 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
3,550,624 + -0.4
3,551,586 + +0.3
3,551,586 + -0.2
3,551,855 - SMc03885 0.29 -0.3
3,551,884 - SMc03885 0.32 +0.4
3,551,893 - SMc03885 0.33 -0.3
3,551,893 - SMc03885 0.33 -1.2
3,551,893 - SMc03885 0.33 -1.7
3,552,093 + SMc03885 0.52 -1.8
3,552,093 + SMc03885 0.52 +1.3
3,552,093 + SMc03885 0.52 +0.8
3,552,093 + SMc03885 0.52 -0.4
3,552,094 - SMc03885 0.52 -2.0
3,552,094 - SMc03885 0.52 +0.0
3,552,094 - SMc03885 0.52 +1.7
3,552,095 + SMc03885 0.52 +0.1
3,552,139 - SMc03885 0.56 +0.1
3,552,685 + +0.0
3,552,685 + -1.0
3,552,685 + -1.4
3,552,686 - +0.4
3,552,686 - -0.7
3,552,686 - -0.1
3,552,686 - -0.8
3,552,691 + -0.4
3,552,691 + +1.1
3,552,691 + -0.5
3,552,692 - +0.1
3,552,692 - +0.3
3,552,726 - -0.0
3,552,807 - -2.5
3,552,808 + +0.8
3,552,808 + +0.2
3,552,808 + -1.0
3,552,808 + +0.2
3,552,809 - -0.4
3,552,809 - -1.7

Or see this region's nucleotide sequence