Strain Fitness in Sinorhizobium meliloti 1021 around SMc03856

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03855 and SMc03856 overlap by 4 nucleotidesSMc03856 and SMc03857 are separated by 384 nucleotides SMc03855: SMc03855 - hypothetical protein, at 3,519,890 to 3,521,164 SMc03855 SMc03856: SMc03856 - diaminopimelate epimerase, at 3,521,161 to 3,522,081 SMc03856 SMc03857: SMc03857 - signal recognition particle protein, at 3,522,466 to 3,524,007 SMc03857 Position (kb) 3521 3522 3523Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3520.293 kb on - strand, within SMc03855at 3520.482 kb on - strand, within SMc03855at 3520.579 kb on - strand, within SMc03855at 3521.119 kb on - strandat 3521.119 kb on - strandat 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.147 kb on - strandat 3522.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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3,520,293 - SMc03855 0.32 +2.2
3,520,482 - SMc03855 0.46 +4.1
3,520,579 - SMc03855 0.54 +4.1
3,521,119 - +2.8
3,521,119 - +5.4
3,522,123 - +0.3
3,522,123 - +0.3
3,522,123 - +2.5
3,522,147 - +0.1
3,522,323 + +0.5

Or see this region's nucleotide sequence