Strain Fitness in Sinorhizobium meliloti 1021 around SMc03778
Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Cycloserine 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,443,767 | + | SMc03777 | 0.31 | +1.2 | |
3,443,767 | + | SMc03777 | 0.31 | +0.3 | |
3,444,097 | + | SMc03777 | 0.56 | -1.1 | |
3,444,097 | + | SMc03777 | 0.56 | -0.0 | |
3,444,097 | + | SMc03777 | 0.56 | -0.1 | |
3,444,097 | + | SMc03777 | 0.56 | -0.4 | |
3,444,097 | + | SMc03777 | 0.56 | -0.1 | |
3,444,097 | + | SMc03777 | 0.56 | +0.0 | |
3,444,097 | + | SMc03777 | 0.56 | +0.1 | |
3,444,097 | + | SMc03777 | 0.56 | +2.2 | |
3,444,197 | + | SMc03777 | 0.64 | -1.5 | |
3,444,197 | + | SMc03777 | 0.64 | +1.3 | |
3,444,293 | + | SMc03777 | 0.72 | -0.0 | |
3,444,293 | + | SMc03777 | 0.72 | +0.1 | |
3,444,423 | + | SMc03777 | 0.82 | -0.5 | |
3,445,317 | + | -0.0 | |||
3,445,336 | + | -1.0 | |||
3,445,336 | + | +2.4 | |||
3,445,341 | - | -2.2 | |||
3,445,510 | - | SMc03780 | 0.38 | +0.7 | |
3,445,510 | - | SMc03780 | 0.38 | +0.0 | |
3,445,532 | - | SMc03780 | 0.42 | +0.7 | |
3,445,760 | + | SMc03780 | 0.88 | -0.9 | |
3,445,761 | - | SMc03780 | 0.89 | +0.9 | |
3,445,898 | + | -0.9 | |||
3,445,932 | + | +0.7 | |||
3,445,974 | + | +0.4 | |||
3,445,974 | + | +0.2 | |||
3,446,252 | + | SMc03781 | 0.59 | -0.2 | |
3,446,252 | + | SMc03781 | 0.59 | +0.2 | |
3,446,253 | - | SMc03781 | 0.59 | -0.1 | |
3,446,253 | - | SMc03781 | 0.59 | -0.0 |
Or see this region's nucleotide sequence